WormBase Tree Display for CDS: ZK637.8e
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| ZK637.8e | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK637 | |||
| Structure | Source_exons | 1 | 153 | |||
| 235 | 411 | |||||
| 519 | 647 | |||||
| 1684 | 1805 | |||||
| 1966 | 2175 | |||||
| 2230 | 3484 | |||||
| 3606 | 3728 | |||||
| 4707 | 4926 | |||||
| 5091 | 5262 | |||||
| 5482 | 5587 | |||||
| DB_info | Database | SwissProt | UniProtAcc | P30628 | ||
| UniProtIsoformAcc | P30628-5 | |||||
| UniProt | UniProtAcc | P30628 | ||||
| UniProt_GCRP | UniProtAcc | P30628 | ||||
| AlphaFold | entry | P30628 | ||||
| NCBI_protein | GI_number | GI:20338974 | ||||
| Protein_id | CHROMOSOME_III | CAD30452 | 1 | |||
| DB_remark | UNC-32 protein; contains similarity to Pfam domain PF01496 (V-type ATPase 116kDa subunit family); contains similarity to Interpro domains IPR026028 (ATPase, V0 complex, subunit 116kDa, eukaryotic), IPR002490 (V-type ATPase, V0 complex, 116kDa subunit family) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | BJ765880 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00006768 | ||||
| Corresponding_transcript | ZK637.8e.1 | |||||
| Corresponding_protein | CE30577 | |||||
| Corresponding_PCR_product | TH:300g5 | |||||
| TH:341g10 | ||||||
| WBPaper00038381:ZK637_1_1 | ||||||
| cenix:300-g5 | ||||||
| cenix:341-g10 | ||||||
| mv_ZK637.8a | ||||||
| mv_ZK637.8b | ||||||
| sjj_ZK637.8 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (25) | ||||||
| RNAi_result (28) | ||||||
| Microarray_results (26) | ||||||
| Brief_identification | V-type proton ATPase 116 kDa subunit a 1 | Accession_evidence | UniProt | SP:P30628 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 08 Oct 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [020418 kj] Isoforms completely reannotated due to supprting evidence from cDNAs (AF320899 to AF320904) | |||||
| [141008 gw3] The non-homologous mutually exclusive exon splicing in the 4th exon and the homologous mutually exclusive exon splicing in the 7th exon of these isoforms has been confirmed by RT-PCR in this paper. | Paper_evidence | WBPaper00045789 | ||||
| Curator_confirmed | WBPerson4025 | |||||
| Method | curated |
