WormBase Tree Display for CDS: ZK617.1b
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| ZK617.1b | SMap | S_parent | Sequence | CHROMOSOME_IV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (34) | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.11.1 | ||
| SwissProt | UniProtAcc | Q23551 | ||||
| UniProtIsoformAcc | Q23551-1 | |||||
| UniProt | UniProtAcc | Q23551 | ||||
| UniProt_GCRP | UniProtAcc | Q23551 | ||||
| AlphaFold | entry | Q23551 | ||||
| NCBI_protein | GI_number | GI:26985879 | ||||
| TREEFAM | TREEFAM_ID | TF316477 | ||||
| Protein_id | CHROMOSOME_IV | CAA98065 | 2 | |||
| DB_remark | UNC-22 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00069 (Protein kinase domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR000719 (Protein kinase domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Accession_evidence | NDB | BJ139253 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00006759 | ||||
| Corresponding_transcript | ZK617.1b.1 | |||||
| Corresponding_protein | CE33018 | |||||
| Corresponding_PCR_product | cenix:155-g4 | |||||
| mv_CAA33463 | ||||||
| sjj_ZK617.1 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (17) | ||||||
| RNAi_result (41) | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Twitchin | Accession_evidence | UniProt | SP:Q23551 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 23 Apr 2014 00:00:00 | WBPerson4025 | ||||
| Remark | 960523: Prediction utilises stronger exons but is discordant with the prediction in the Benian_GM (1993) paper (EM:CETWIMUSC). Maybe an alternative splice variant. | |||||
| Annotated using Pfam | ||||||
| [alt] Alternate isoform defined by yk1144f03 | ||||||
| [021125 dl] Altered splice acceptor into exon 13 | Curator_confirmed | WBPerson1846 | ||||
| [021125 dl] Modified prediction based on EST data. Added new 5' exon | Curator_confirmed | WBPerson1846 | ||||
| Method | curated |
