WormBase Tree Display for CDS: Y60A3A.18
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| Y60A3A.18 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y60A3A | |||
| Structure | Source_exons | 1 | 63 | |||
| 121 | 366 | |||||
| 439 | 609 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9U1Y9 | ||
| UniProt | UniProtAcc | Q9U1Y9 | ||||
| UniProt_GCRP | UniProtAcc | Q9U1Y9 | ||||
| AlphaFold | entry | Q9U1Y9 | ||||
| NCBI_protein | GI_number | GI:6425369 | ||||
| TREEFAM | TREEFAM_ID | TF354233 | ||||
| Protein_id | CHROMOSOME_V | CAB60402 | 1 | |||
| DB_remark | SKR-4 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004810 | ||||
| Corresponding_transcript | Y60A3A.18.1 | |||||
| Corresponding_protein | CE24523 | |||||
| Corresponding_PCR_product | cenix:215-c5 | |||||
| mv_F44G3.6_1 | ||||||
| Corresponding_oligo_set | 188228_at | |||||
| 188229_s_at | ||||||
| A_12_P110675 | ||||||
| Aff_Y60A3.F | ||||||
| GPL19516_CGZ0051432 | ||||||
| GPL21109_Y60A3A.18 | ||||||
| GPL3518_CE24523 | ||||||
| GPL8304_CE_WBGene00004810_A | ||||||
| GPL8304_CE_WBGene00004810_B | ||||||
| GPL8673_Y60A3A_18P00061 | ||||||
| GPL8673_Y60A3A_18P00144 | ||||||
| GPL8673_Y60A3A_18P00269 | ||||||
| GPL9450_Y60A3A.18 | ||||||
| cea2.d.45986 | ||||||
| cea2.d.45990 | ||||||
| Matching_cDNA (25) | ||||||
| RNAi_result | WBRNAi00069084 | |||||
| WBRNAi00086783 | ||||||
| WBRNAi00057808 | ||||||
| WBRNAi00086782 | ||||||
| WBRNAi00086801 | ||||||
| WBRNAi00069085 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Skp1-related protein | Accession_evidence | UniProt | TR:Q9U1Y9 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf023287 | |||||
| Method | curated |
