WormBase Tree Display for CDS: Y58A7A.4
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| Y58A7A.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y58A7A | |||
| Structure | Source_exons | 1 | 261 | |||
| 310 | 1289 | |||||
| 1334 | 1477 | |||||
| 1524 | 1962 | |||||
| 2010 | 2235 | |||||
| 2300 | 2964 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q966A5 | ||
| UniProt | UniProtAcc | Q966A5 | ||||
| UniProt_GCRP | UniProtAcc | Q966A5 | ||||
| AlphaFold | entry | Q966A5 | ||||
| NCBI_protein | GI_number | GI:351021017 | ||||
| TREEFAM | TREEFAM_ID | TF317685 | ||||
| Protein_id | CHROMOSOME_V | CCD63023 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF01485 (IBR domain, a half RING-finger domain); contains similarity to Interpro domain IPR002867 (IBR domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00021978 | ||||
| Corresponding_transcript | Y58A7A.4.1 | |||||
| Corresponding_protein | CE26197 | |||||
| Corresponding_PCR_product | cenix:117-e4 | |||||
| cenix:225-c2 | ||||||
| mv_Y58A7A.b | ||||||
| sjj2_Y58A7A.4 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | adult_Nanopore_Roach_4568 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_109697 | ||||||
| L1_Nanopore_Roach_4869 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_107453 | ||||||
| L1_Nanopore_Li_33402 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_137826 | Inferred_automatically | transcript_builder.pl | ||||
| yk31a10.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_204440 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG845|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00057728 | |||||
| WBRNAi00057727 | ||||||
| Microarray_results (13) | ||||||
| Brief_identification | IBR domain-containing protein | Accession_evidence | UniProt | TR:Q966A5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
