WormBase Tree Display for CDS: Y54G2A.36
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| Y54G2A.36 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y54G2A | |||
| Structure | Source_exons | 1 | 173 | |||
| 224 | 437 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q7Z073 | ||
| UniProt | UniProtAcc | Q7Z073 | ||||
| UniProt_GCRP | UniProtAcc | Q7Z073 | ||||
| AlphaFold | entry | Q7Z073 | ||||
| NCBI_protein | GI_number | GI:351051357 | ||||
| TREEFAM | TREEFAM_ID | TF317375 | ||||
| Protein_id | CHROMOSOME_IV | CCD83525 | 1 | |||
| DB_remark | contains similarity to Interpro domain IPR039260 (Chondroitin proteoglycan 3) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00021898 | ||||
| Corresponding_transcript | Y54G2A.36.1 | |||||
| Y54G2A.36.2 | ||||||
| Y54G2A.36.3 | ||||||
| Y54G2A.36.4 | ||||||
| Y54G2A.36.5 | ||||||
| Corresponding_protein | CE34417 | |||||
| Corresponding_oligo_set (11) | ||||||
| Matching_cDNA | male_Nanopore_Roach_110474 | |||||
| male_Nanopore_Roach_131308 | ||||||
| young_adult_Nanopore_Roach_2603 | ||||||
| young_adult_Nanopore_Roach_3113 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_35366 | ||||||
| young_adult_Nanopore_Roach_41302 | ||||||
| young_adult_Nanopore_Roach_47267 | ||||||
| young_adult_Nanopore_Roach_79263 | ||||||
| young_adult_Nanopore_Roach_89144 | ||||||
| young_adult_Nanopore_Roach_120450 | ||||||
| young_adult_Nanopore_Roach_120842 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_125853 | ||||||
| adult_Nanopore_Roach_63833 | ||||||
| adult_Nanopore_Roach_72213 | ||||||
| adult_Nanopore_Roach_84682 | ||||||
| adult_Nanopore_Roach_99361 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_12193 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_80800 | ||||||
| male_Nanopore_Roach_40794 | ||||||
| adult_Nanopore_Roach_2640 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_107340 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_89037 | ||||||
| male_Nanopore_Roach_3200 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_95708 | ||||||
| adult_Nanopore_Roach_30807 | ||||||
| L1_Nanopore_Roach_70149 | ||||||
| adult_Nanopore_Roach_39584 | ||||||
| adult_Nanopore_Roach_72924 | ||||||
| L1_Nanopore_Li_159762 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_360739 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7969|c3_g1_i3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_186462 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7969|c3_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN895309 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_188364 | Inferred_automatically | transcript_builder.pl | ||||
| EC006041 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_312723 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR156C1_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_341093 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_212321 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (11) | ||||||
| Brief_identification | EB domain-containing protein | Accession_evidence | UniProt | TR:Q7Z073 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 12 Sep 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [130912 gw3] Took a look at this. It is probably a pseudogene. | Curator_confirmed | WBPerson4025 | |||
| Associated_feature | WBsf129318 | |||||
| Method | curated |
