WormBase Tree Display for CDS: Y51H4A.7
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Y51H4A.7 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y51H4A | |||
Structure | Source_exons | 1 | 126 | |||
927 | 1198 | |||||
1245 | 1386 | |||||
1433 | 1561 | |||||
2954 | 3246 | |||||
3518 | 3859 | |||||
3912 | 4033 | |||||
5783 | 6076 | |||||
6218 | 6510 | |||||
DB_info | Database | KEGG | KEGG_id | 4.2.1.49 | ||
SwissProt | UniProtAcc | Q9NAE2 | ||||
UniProt | UniProtAcc | Q9NAE2 | ||||
UniProt_GCRP | UniProtAcc | Q9NAE2 | ||||
AlphaFold | entry | Q9NAE2 | ||||
NCBI_protein | GI_number | GI:34555983 | ||||
TREEFAM | TREEFAM_ID | TF314306 | ||||
Protein_id | CHROMOSOME_IV | CAB61139 | 2 | |||
DB_remark | UROC-1 protein; contains similarity to Pfam domains PF01175 (Urocanase Rossmann-like domain), PF17391 (Urocanase N-terminal domain), PF17392 (Urocanase C-terminal domain); contains similarity to Interpro domains IPR036190 (Urocanase superfamily), IPR038364 (Urocanase, central domain superfamily), IPR035400 (Urocanase, N-terminal domain), IPR035401 (Urocanase, C-terminal domain), IPR035085 (Urocanase, Rossmann-like domain), IPR023637 (Urocanase) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00013103 | ||||
Corresponding_transcript | Y51H4A.7.1 | |||||
Y51H4A.7.2 | ||||||
Corresponding_protein | CE35671 | |||||
Corresponding_PCR_product | cenix:241-g2 | |||||
mv_Y51H4A.7 | ||||||
sjj2_Y51H4A.7.1 | ||||||
sjj_Y51H4A.f | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (109) | ||||||
RNAi_result | WBRNAi00037369 | |||||
WBRNAi00062446 | ||||||
WBRNAi00000898 | ||||||
WBRNAi00057194 | ||||||
Microarray_results (19) | ||||||
Brief_identification | Probable urocanate hydratase | Accession_evidence | UniProt | SP:Q9NAE2 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 17 Jun 2014 00:00:00 | WBPerson4025 | ||||
Remark | [030829 dl] Truncated prediction at 5' because the EST/OST data indicates exon is UTR | Curator_confirmed | WBPerson1846 | |||
Method | curated |