WormBase Tree Display for CDS: Y47D3A.22
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| Y47D3A.22 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47D3A | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9U2C5 | ||
| UniProt | UniProtAcc | Q9U2C5 | ||||
| UniProt_GCRP | UniProtAcc | Q9U2C5 | ||||
| AlphaFold | entry | Q9U2C5 | ||||
| NCBI_protein | GI_number | GI:25005149 | ||||
| TREEFAM | TREEFAM_ID | TF318525 | ||||
| Protein_id | CHROMOSOME_III | CAB57896 | 3 | |||
| DB_remark | MIB-1 protein; contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)), PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR002110 (Ankyrin repeat), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036770 (Ankyrin repeat-containing domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00012933 | ||||
| Corresponding_transcript | Y47D3A.22.1 | |||||
| Corresponding_protein | CE32261 | |||||
| Corresponding_PCR_product | cenix:177-d11 | |||||
| cenix:332-f7 | ||||||
| mv_Y47D3A.22 | ||||||
| sjj2_Y47D3A.22 | ||||||
| sjj_Y47D3A.y | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (43) | ||||||
| RNAi_result | WBRNAi00089665 | |||||
| WBRNAi00056746 | ||||||
| WBRNAi00089664 | ||||||
| WBRNAi00056745 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | RING-type domain-containing protein | Accession_evidence | UniProt | TR:Q9U2C5 | ||
| RNASeq_FPKM (74) | ||||||
| Remark | [010606 kj] Exon border changed according to EST yk502c9.5 | |||||
| [021029 ar2] minor change to exon 10 based on EST yk1216b06.3 | Curator_confirmed | WBPerson1847 | ||||
| Method | curated |
