WormBase Tree Display for Variation: WBVar02125051
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| WBVar02125051 | Evidence | Paper_evidence | WBPaper00042428 | ||
|---|---|---|---|---|---|
| Name | Public_name | qx159 | |||
| HGVSg | CHROMOSOME_IV:g.14058377_14063330del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y37A1B | |
| Flanking_sequences | tctgattggcttaaagtatcaagcttccttaactattgaggttgttatgtaacgcatgcatgttttccttatttgtgtccaaaaagttataaaataaaaaaaatcaaaaaattccgatttccaggaaccaactcggcccaacgttcaatcctcgatcggctcgaactcccgtcgtgacctcagccgtagccactcggaacacggtggacctgatcgaggat | tttagttcgagtgatcatctattttgagat | |||
| Mapping_target | Y37A1B | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Laboratory | XW | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00045019 | |||
| WBGene00012537 | |||||
| WBGene00003086 | |||||
| Transcript | Y37A1B.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | 522-? | ||||
| CDS_position | 518-? | ||||
| Protein_position | 173-? | ||||
| Intron_number | 5-9/10 | ||||
| Exon_number | 5-11/11 | ||||
| Y37A1B.2f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 338-? | ||||
| CDS_position | 335-? | ||||
| Protein_position | 112-? | ||||
| Intron_number | 4-8/9 | ||||
| Exon_number | 4-10/10 | ||||
| Y37A1B.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 596-? | ||||
| CDS_position | 596-? | ||||
| Protein_position | 199-? | ||||
| Intron_number | 3-7/8 | ||||
| Exon_number | 3-9/9 | ||||
| Y37A1B.2e.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| Y37A1B.2d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 528-? | ||||
| CDS_position | 518-? | ||||
| Protein_position | 173-? | ||||
| Intron_number | 5-9/10 | ||||
| Exon_number | 5-11/11 | ||||
| Y37A1B.4.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-5/6 | ||||
| Exon_number | 1-7/7 | ||||
| Y37A1B.2h.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-5/5 | ||||
| Exon_number | 1-6/6 | ||||
| Y37A1B.2g.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-5/5 | ||||
| Exon_number | 1-6/6 | ||||
| Pseudogene | Y37A1B.18 | VEP_consequence | transcript_ablation | ||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| Genetics | Interpolated_map_position | IV | 11.3463 | ||
| Reference | WBPaper00042428 | ||||
| Method | Deletion_allele |
