WormBase Tree Display for Variation: WBVar02123775
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WBVar02123775 | Name | Public_name | WBVar02123775 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00854698 | |||||||
HGVSg | CHROMOSOME_V:g.18040029_18050028del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y59A8B | ||||
Flanking_sequences | GTACTCTAATTTTGCCAATTTTGACTTGTTATACCAAGTC | ACACGTCAAAAATTTTACAGTACAATTTTGACTAAAACTATTGATTTTTTAGCCAAAAATTTAGTAAAATGACACAAAATTGACTTAGTTTTATGCTTAAACAGACATACTACGCGGAACTTATTCAGAAACCAGATGTGTGTTAAGAATTCAGTAGATTTGGTGCTCCAAAAAACATAAAAAATATCAAATTTTTTCGAGTTTTGCACGGCAAATTTGCCGAATTTGCCGTTTGCCGAGCTCGGCAAATTTTGAGATTTGCCGCACACCCCTGATTTGGATTTAGAATGTTTAGAAAAGAGCAATTTTAGAGATAAAATTCAAGAAATTTAAAAAATTCCGAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAGTCAAAAAAGTGAGACTTTTTTGAAAATTTTGATTTTTTTTAATTTAGAAAATTCTCGAAAATTTGAAAAAAAATTCAAATTATTCGGAAAATTGCGTATATTTGTGTGAAAAATAAAAAAAAATAATTTAAAAATTCCGAAAATTTGAAGAAAGTATGTTTAAAACATTTTTTTAATTGAAAAATTCCGGAAATTTCAAAAAAAAAATTTTGTTTGAAAACATATGAAAAACTATTTAAAGTATCAATTTTTAGATAAAATTCAAGAAATTTCAAAAATTCCGAAAATTCCAAAATTTTTGATAATTGCTCATTTCCAACAATATCAAAAATGAAAAAAAGTGAAAATTTTGTTGAAAATTTAAATTTTTTTTTTTAATTTAGAAAATTCTCGGAAAATTGCGTATATTTGTGTGAAAAATTCCTAAAGTGAGATTTTTCGGAAATTTTCATTTTTGGCGATTTGCCTAATATGCCGGAAATTATCAATTCCGGCAAATTGCCGTTTTTCCGATTTGCCGGAAAAATTTGAAACATTTGGGAAAAAAATTGTTTTTGAAATTTTTAAAAATAATTATCTATGTAAATTAAAAAAAATATATATATATGTATATAACTTTTTTATTTAAAAATTCCGAAAATTCGAAAAAAAAACATATGTTTGGAAATTTCAACTTTTTTATTTACAAAAAAATTTAAACTTCAAAAAAAATCTGCTTTGAAAATTTATGAAAAAATATTTAAAGTAGCATATATATTTGCAAAACATTGAAAATTTGGCTGAAAAAACTGAAAATTTAATCAATTTTGAAAATAAAAAAATGTAAATTTTGAAAATAAAAAAAACTTTCAAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAAGTAAAAAAGTGAGACTTTTTTTGAAAATTTAAATTTTTTAAATTTAGAAAATTCTCGGAAATTTGAAAAAAAAGAACAATTATTCGTAAAATTGCAAATATTTGTGTGGAAAATGTGTGGAAATTAAAAAAAAATTTCATCTAAAAATTCCCAAAATTTGAAGAAAGTATGTTTGAAACATTTCATTAATTTTTTTTATAATTAAATTCCGGAAATTTCAAAAAAAAAAATTTTGTTTGAAAACATATGAAAAACTATTTAAAGTATCATCAATTTTTAGATAAAATTCAAGAAATTTCAAAAATTCCAAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAGTCAAAAAAGTGAAAATTTTGTTGAAAATTTTGAATTTTTTTTAAATTCAGAAACTTTATAAGAAAAACAACCAAAGGTAACTTTTTAGTATATTTTTTCATTGGAAATTTTGAAGAAAATTTTTTAAAAATAAAACTTCTCGAAAATTTGAAAAAAAAATAAAATTCGAAAGTTACGTATATTTGTGTGAAAAAAACGTTTTTTATTTCAATTTAAAAAATTCCTAAAATTTTGAAAAAATATCAACCGAAAAAAAACATTTTTTTTAAATGAAAATTCTCGGAAAGTAGCGAAAAATTCCGAAAGTGATGCATATTCACAAAAAAAATTATTTTTTATTTAATAAAAAAACGTAATTTTGAAACATTTTTTTGTTTAAAAATGTTTTTTTTTATTTACAAAAAAAATTAAAATTCCGGAAAAGTCTGAAATTGAATATTAAAAAAAAAAAGAAAACAGCAATTTATCCCTTAATTTTGAAAAATATTCAATTTCGACATTTTACTTTTTTTAAAATTAGATTTAAAATTTCTGAAAATTTGCAGAAAAAACTGAAAAAATAACTACCCCGAAAAAAAAGTTCTTAAAAACATATTTCCAGGTTCTCTACGAGACGGAAGAAGGATTCGCACCACCAGAAGACGAGGCAAATGGCGGAGCAGAAGCCGAAGAATTCTAAACTATTTAATATTTTCTCTATTGTTTAATTCCAGCTTTCAAGCCAAGCTTCTACCCAAACACTTCAATTTTACTCCCAAAAAAATATGCGATTTTACAATGTTATATTTCACCGAAAACCCCCTCTGCTTATAATTATAGTTAACTTATTAATTTTCATGAACTTATTCAATAACTGCACCAAATTGGCCGCCGCTTCTTCTTTTCCACTTGAAATTTTCAGTTTTTCTTTTTTCATTCTTCCATCCCAACACCTATGACATTGTCAGTATTTTAATTGATTGGCTTTCAATTTTTTTTCGATTTTAAAAATCATTTCCTTTTTTTCACCGAACATTTAACGCTTTTTTCTAATTGTTACGTCGTGCTTTTCTTTGTGCTAAAATAAATTATGATATTTAAAAAAGAATTTTGCTTCCTTCAAACAAAAATTTCAAAAAATGATGGGTCTGCTAAATACATTTTGTAGTTTGTAGTCTGGCATACCCACTTAGTAAAATCATCAGTTTTTGCTGTAATTTTGAACAGTTTTCCCTTAAATTTTGCATTTTCTCGGGATTTGAATGTGACAATTCATGAAAATTTACTCAAAAAATCGATTTTTCGCATAGAAAATATTGGAATTTTGGGATTTAAATTTGTAGTCGTTGATCATATTTTCAAAATGCTCCAAACAGACAAATTTTAAGTTTAGAGCAAAAATTGATTGACAAAACGATGAAAATATGCCCAACGACTCCAAATTCCAATTTTTAAAGTCTTTATCTACACTCATTTTTTCTATTTTCTTTTCTGAGCACACCATAACTGGTTAGATGCTTGGGTCTGCTAAATATTTTTGTGTAGTTTGTAGTCTGGCAAACCCACTCGGTGAAAATGGCCAATTTTGCTGTAATTTTAAGAGGTTATCCTGATTTTTGGCGGGAAAAATCTCAAAATGTGCATTTTCTCGGAGCATGTAATTGAAAATTTACTCAAAAAAATCGATTTTTCGCTTAGAAAATATTTGAATTCGGCAAAATTATGCATAAAATCACAATTTAACCCGTCTGAAAACCCGAAAATCCACATTTTTCATCGATTTTCTGTTAAAAATCTGCTTATTTTCACCTGAAAACACAAAATTTAGTCGAAAAAATGATGGGTCGGCTAAATAATTTTGTGTAGTTTGTAGTCTAGCAGACCGGAAACGATTATTTTTCGATTTTTCTTTTTTTTTTAACCCAAAAGTTTGGGTCTGCTAAACATTGTTGTGTAGTTTGTAGTGTGGCAGGCCCAATTGCTTCAACATTGGACTGTGTCACTGGAATTTGAGATTTAGAAATAATTTATTGCGCGTAGTAAAACTAATCAAGTGAACATTTTGAACGGGTGAAAAAGCGAATAAATAAAAAATAAATAAATATTTAAAAAATGCGTGGGCGGTGGAATGTACAAATTATCGATTGATGATTCTCAACATAATCCTTCATCATCGTCATCTTCTTGTCCGTCACCGAGTCCCGCATTTCCAGACGGTGCTTTTAGAATTTTCATCACTCGGAGATACTGAAAAATTGAACGGTTTTTAGGATGATAATTCGATAAAATGAGCCAAACCTCATTGTCCATAGACCGTAGGGCTCCACATTTCAGTACATTCTGGAAACTTTCATCATCGCCAGCCTCATAGAATCCGATAAGATTCTCACATACACGTCCATCTTCTGATGTTTGAAAATCCGGAGATTGACTGCAAAAAATTGAATTTTCGATGGAATTGTTTAAATTTTGATTAGAAAAAAAAAATCGATTTTTCAAAAACTTACATTTTTTTTAGAGCTACGAAATTGTTTTTTTTGTTCTGATTTTTTCGAAAAAAAAATGGTCTGCTAAACTACAATCTACAAACCATTTAGGTCTGCTAATTATTTTCTGTAGTTTGTAGTCTGGCAGACCCACAAATGGGTCTGCCAGAGTACAAAAACTGCAAAAATACAGTTTTTAGAATTTTCCGTTTTTCTAACAAAAGTGCAAATTTACGAAAAATCAGCATTTTTGCAATAAAAAACTGGACAATTCGGCAAAAACCGGTTTAAAAAAAATATTTCCGTGTAGTTTGTAGTTTGGGTCTGCCAGACTACAAACTACAGAAAATAATTAGCAGACCTAAATGGTTTGTAGTTTGTTGTCTGGCAGACCCAAACTACAAACTACACGGAAATATTTTTTTTAAACCGGTTTTTGCCGAATTGTCCAGTTTTTTATTGCAAAAATGCTGATTTTTCGTAAATTTGCACTTTTGTTAGAAAAACGGAAAATTCCAAAGACCCATTTGTGGGTCTGCCAGACTACAAACTACAAACCACTTGGGTCTGCTGATTATATTTTGTAGTTTGTAGTCTGGCAGACCCAAATCAGTTTGGGTCTGCCAGACTACAAACTACACAACAGCTTCGAAAAATCGAGTTTCGTCGTATTTTTCGACTTCTTCCGCATAAATTTCAATTTTTAATAAAATTTTTCGCGTGTCTTCGTACCAAATAACCCATCCATAATCTTTGAGAGCCGCCACTGAATCTTCCAGAGCCAAATTCACTATAACAAGACCGATTCCGAGTTGGCCAATACGTGGATATTCCTGAAAATCGGAAAAATTTAAAAAAAATCTTTGTCAAAATTTAGAAAATTCAAAATTCTTGTAGTTTGTAGTCTAGCAGACCAATTTTTTAAATAAAGTTGAAAAATTCAAATTTTCGTAAAAATACACGGAAAAATCAGAAATTGATTGTTTTTTTTGTAGTTTGTAGTCTAAAAAATAGCACGTCCCACTATAAACTACAAAAGTTCAATTTTTAAAAAAGTGAAAAACAAAAAAAAATCAAAAATTTGCAATTTTTCAGAACATCCAAAAAAATTAAAAAATTTTGTTTTTTTTTTCGTTTTTTCTATAGAATTTTCGTGTAGTTTGTAGTCTATCAGTACCCGAATTTCGGCGAATTTCTCAATTTCCTCCCGAATCGATCCGAGTGCTCCTTTATAATCAGTCAATTGTAGTGATAATTTTGTGATTTGTTTCAAGAAATTGCTCGCCATTTTTGCACGATCCGATTGTTGGACCAAAGCCAATCCACGTTGGTAAATCTGCAAAAAAAATTGATTTTTTATCAATCGGCTGTGCATTTTCTCAGGAAATTTTGTGGAAAAACCACGGAAAATCGATTTTTTACCCAGAAAACTTGAAAAACACCATTTTCAGAGCTTTTATAGCCAAAAAATGCCGAGAATCCGAATATTTCCAGTTAAAAACGCAAAAAAAAAATCAAAATTTAGTCGAAAAATATGGGTCTGCTAAATACATTTTGTAGTTTGTAGTCTGGCAGACCCATTTGGTAAAAATCGTCAATTTTGCTCTAATTTTGAGCAATTTTCCAGATTTTTTGGCTGGATCACTCTCAATTATGCATTTTCTCGAAAATTTGCAGAAAAAAATCAATTTTCACATAGAAAATATGCATAAAATCACATTTTTCGCCAAAAAAACCGTCTAAAAACCCAAAAAAATACACATTTTCTGTGAGAAACGGAGTTTTGCCCTAAAAATCTGCTCATTTTCGTTTGAAAACTCAAAATTTTGTCTAACTATG | ||||||
Mapping_target | Y59A8B | |||||||
Source_location | 225 | CHROMOSOME_V | 18040001 | 18050000 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00305846 | ||||||
WBGene00013343 | ||||||||
WBGene00305847 | ||||||||
WBGene00200466 | ||||||||
WBGene00197676 | ||||||||
WBGene00013344 | ||||||||
WBGene00305845 | ||||||||
Transcript | Y59A8B.29 | VEP_consequence | transcript_ablation | |||||
VEP_impact | HIGH | |||||||
Exon_number | 1/1 | |||||||
Y59A8B.45 | ||||||||
Y59A8B.7.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
Intron_number | 2-5/6 | |||||||
Exon_number | 1-5/7 | |||||||
Y59A8B.33 | VEP_consequence | transcript_ablation | ||||||
VEP_impact | HIGH | |||||||
Exon_number | 1/1 | |||||||
Y59A8B.44 | ||||||||
Y59A8B.6.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
Intron_number | 11-13/14 | |||||||
Exon_number | 12-15/15 | |||||||
Y59A8B.46 | ||||||||
Remark | The boundaries of this variant have been identified only approximately | |||||||
This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous | ||||||||
Method | WGS_Flibotte |