WormBase Tree Display for Variation: WBVar02122165
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WBVar02122165 | Name | Public_name | WBVar02122165 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00853088 | |||||||
Sequence_details | SMap | S_parent | Sequence | Y59A8B | ||||
Flanking_sequences | GAAGAAATGCAGTCATATTCCAGCGGCGAA | TCTGCATCAACCGTAGCAGCGGCTGCTGCTGCTGCACCACCGGGAGTCGATATGGCGACATTTAATAAATTAAAAGAAGAACTGGAAGAAGTTACACGTCAGCTGACAGAATCTGACAATGTTATTGCAAGTCTGGAAAAAGAAAGAGACTTTTATTTTAGTAAACTTCGAACGATTGAAGTTATTTGTCAGGATAATGAATCGATTGGAAATGTTGAAGTTAATCGAGTTTTGGAGGTAAAAATTGATGAAAATTGGGAAAAACTACCGAAAGTAGCCTGAAATTTGGATCAGGGATGTGCGGCAAATTTGCCGAATTTGCCGAATTTGCCGAATTTGCCGAGCTCGGCAAATTTCAAAAAAGTAGATTTGCCGAATTTGCCGCACACGTCAAAAATTTTACAGTACAATTTTGACTAAAACTATTGATTTTTTAGCCAAAAATTTAGTAAAATGACACAAAATTGACTTAGTTTTATGCTTAAACAGACATACTACGCGGAACTTATTCAGAAACCAGATGTGTGTTAAGAATTCAGTAGATTTGGTGCTCCAAAAAACATAAAAAATATCAAATTTTTTCGAGTTTTGCACGGCAAATTTGCCGAATTTGCCGTTTGCCGAGCTCGGCAAATTTTGAGATTTGCCGCACACCCCTGATTTGGATTTAGAATGTTTAGAAAAGAGCAATTTTAGAGATAAAATTCAAGAAATTTAAAAAATTCCGAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAGTCAAAAAAGTGAGACTTTTTTGAAAATTTTGATTTTTTTTAATTTAGAAAATTCTCGAAAATTTGAAAAAAAATTCAAATTATTCGGAAAATTGCGTATATTTGTGTGAAAAATAAAAAAAAATAATTTAAAAATTCCGAAAATTTGAAGAAAGTATGTTTAAAACATTTTTTTAATTGAAAAATTCCGGAAATTTCAAAAAAAAAATTTTGTTTGAAAACATATGAAAAACTATTTAAAGTATCAATTTTTAGATAAAATTCAAGAAATTTCAAAAATTCCGAAAATTCCAAAATTTTTGATAATTGCTCATTTCCAACAATATCAAAAATGAAAAAAAGTGAAAATTTTGTTGAAAATTTAAATTTTTTTTTTTAATTTAGAAAATTCTCGGAAAATTGCGTATATTTGTGTGAAAAATTCCTAAAGTGAGATTTTTCGGAAATTTTCATTTTTGGCGATTTGCCTAATATGCCGGAAATTATCAATTCCGGCAAATTGCCGTTTTTCCGATTTGCCGGAAAAATTTGAAACATTTGGGAAAAAAATTGTTTTTGAAATTTTTAAAAATAATTATCTATGTAAATTAAAAAAAATATATATATATGTATATAACTTTTTTATTTAAAAATTCCGAAAATTCGAAAAAAAAACATATGTTTGGAAATTTCAACTTTTTTATTTACAAAAAAATTTAAACTTCAAAAAAAATCTGCTTTGAAAATTTATGAAAAAATATTTAAAGTAGCATATATATTTGCAAAACATTGAAAATTTGGCTGAAAAAACTGAAAATTTAATCAATTTTGAAAATAAAAAAATGTAAATTTTGAAAATAAAAAAAACTTTCAAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAAGTAAAAAAGTGAGACTTTTTTTGAAAATTTAAATTTTTTAAATTTAGAAAATTCTCGGAAATTTGAAAAAAAAGAACAATTATTCGTAAAATTGCAAATATTTGTGTGGAAAATGTGTGGAAATTAAAAAAAAATTTCATCTAAAAATTCCCAAAATTTGAAGAAAGTATGTTTGAAACATTTCATTAATTTTTTTTATAATTAAATTCCGGAAATTTCAAAAAAAAAAATTTTGTTTGAAAACATATGAAAAACTATTTAAAGTATCATCAATTTTTAGATAAAATTCAAGAAATTTCAAAAATTCCAAAATTTTTGATAATTGCTAATTTCCAACTATATCAAAGTCAAAAAAGTGAAAATTTTGTTGAAAATTTTGAATTTTTTTTAAATTCAGAAACTTTATAAGAAAAACAACCAAAGGTAACTTTTTAGTATATTTTTTCATTGGAAATTTTGAAGAAAATTTTTTAAAAATAAAACTTCTCGAAAATTTGAAAAAAAAATAAAATTCGAAAGTTACGTATATTTGTGTGAAAAAAACGTTTTTTATTTCAATTTAAAAAATTCCTAAAATTTTGAAAAAATATCAACCGAAAAAAAACATTTTTTTTAAATGAAAATTCTCGGAAAGTAGCGAAAAATTCCGAAAGTGATGCATATTCACAAAAAAAATTATTTTTTATTTAATAAAAAAACGTAATTTTGAAACATTTTTTTGTTTAAAAATGTTTTTTTTTATTTACAAAAAAAATTAAAATTCCGGAAAAGTCTGAAATTGAATATTAAAAAAAAAAAGAAAACAGCAATTTATCCCTTAATTTTGAAAAATATTCAATTTCGACATTTTACTTTTTTTAAAATTAGATTTAAAATTTCTGAAAATTTGCAGAAAAAACTGAAAAAATAACTACCCCGAAAAAAAAGTTCTTAAAAACATATTTCCAGGTTCTCTACGAGACGGAAGAAGGATTCGCACCACCAGAAGACGAGGCAAATGGCGGAGCAGAAGCCGAAGAATTCTAAACTATTTAATATTTTCTCTATTGTTTAATTCCAGCTTTCAAGCCAAGCTTCTACCCAAACACTTCAATTTTACTCCCAAAAAAATATGCGATTTTACAATGTTATATTTCACCGAAAACCCCCTCTGCTTATAATTATAGTTAACTTATTAATTTTCATGAACTTATTCAATAACTGCACCAAATTGGCCGCCGCTTCTTCTTTTCCACTTGAAATTTTCAGTTTTTCTTTTTTCATTCTTCCATCCCAACACCTATGACATTGTCAGTATTTTAATTGATTGGCTTTCAATTTTTTTTCGATTTTAAAAATCATTTCCTTTTTTTCACCGAACATTTAACGCTTTTTTCTAATTGTTACGTCGTGCTTTTCTTTGTGCTAAAATAAATTATGATATTTAAAAAAGAATTTTGCTTCCTTCAAACAAAAATTTCAAAAAATGATGGGTCTGCTAAATACATTTTGTAGTTTGTAGTCTGGCATACCCACTTAGTAAAATCATCAGTTTTTGCTGTAATTTTGAACAGTTTTCCCTTAAATTTTGCATTTTCTCGGGATTTGAATGTGACAATTCATGAAAATTTACTCAAAAAATCGATTTTTCGCATAGAAAATATTGGAATTTTGGGATTTAAATTTGTAGTCGTTGATCATATTTTCAAAATGCTCCAAACAGACAAATTTTAAGTTTAGAGCAAAAATTGATTGACAAAACGATGAAAATATGCCCAACGACTCCAAATTCCAATTTTTAAAGTCTTTATCTACACTCATTTTTTCTATTTTCTTTTCTGAGCACACCATAACTGGTTAGATGCTTGGGTCTGCTAAATATTTTTGTGTAGTTTGTAGTCTGGCAAACCCACTCGGTGAAAATGGCCAATTTTGCTGTAATTTTAAGAGGTTATCCTGATTTTTGGCGGGAAAAATCTCAAAATGTGCATTTTCTCGGAGCATGTAATTGAAAATTTACTCAAAAAAATCGATTTTTCGCTTAGAAAATATTTGAATTCGGCAAAATTATGCATAAAATCACAATTTAACCCGTCTGAAAACCCGAAAATCCACATTTTTCATCGATTTTCTGTTAAAAATCTGCTTATTTTCACCTGAAAACACAAAATTTAGTCGAAAAAATGATGGGTCGGCTAAATAATTTTGTGTAGTTTGTAGTCTAGCAGACCGGAAACGATTATTTTTCGATTTTTCTTTTTTTTTTAACCCAAAAGTTTGGGTCTGCTAAACATTGTTGTGTAGTTTGTAGTGTGGCAGGCCCAATTGCTTCAACATTGGACTGTGTCACTGGAATTTGAGATTTAGAAATAATTTATTGCGCGTAGTAAAACTAATCAAGTGAACATTTTGAACGGGTGAAAAAGCGAATAAATAAAAAATAAATAAATATTTAAAAAATGCGTGGGCGGTGGAATGTACAAATTATCGATTGATGATTCTCAACATAATCCTTCATCATCGTCATCTTCTTGTCCGTCACCGAGTCCCGCATTTCCAGACGGTGCTTTTAGAATTTTCATCACTCGGAGATACTGAAAAATTGAACGGTTTTTAGGATGATAATTCGATAAAATGAGCCAAACCTCATTGTCCATAGACCGTAGGGCTCCACATTTCAGTACATTCTGGAAACTTTCATCATCGCCAGCCTCATAGAATCCGATAAGATTCTCACATACACGTCCATCTTCTGATGTTTGAAAATCCGGAGATTGACTGCAAAAAATTGAATTTTCGATGGAATTGTTTAAATTTTGATTAGAAAAAAAAAATCGATTTTTCAAAAACTTACATTTTTTTTAGAGCTACGAAATTGTTTTTTTTGTTCTGATTTTTTCGAAAAAAAAATGGTCTGCTAAACTACAATCTACAAACCATTTAGGTCTGCTAATTATTTTCTGTAGTTTGTAGTCTGGCAGACCCACAAATGGGTCTGCCAGAGTACAAAAACTGCAAAAATACAGTTTTTAGAATTTTCCGTTTTTCTAACAAAAGTGCAAATTTACGAAAAATCAGCATTTTTGCAATAAAAAACTGGACAATTCGGCAAAAACCGGTTTAAAAAAAATATTTCCGTGTAGTTTGTAGTTTGGGTCTGCCAGACTACAAACTACAGAAAATAATTAGCAGACCTAAATGGTTTGTAGTTTGTTGTCTGGCAGACCCAAACTACAAACTACACGGAAATATTTTTTTTAAACCGGTTTTTGCCGAATTGTCCAGTTTTTTATTGCAAAAATGCTGATTTTTCGTAAATTTGCACTTTTGTTAGAAAAACGGAAAATTCCAAAGACCCATTTGTGGGTCTGCCAGACTACAAACTACAAACCACTTGGGTCTGCTGATTATATTTTGTAGTTTGTAGTCTGGCAGACCCAAATCAGTTTGGGTCTGCCAGACTACAAACTACACAACAGCTTCGAAAAATCGAGTTTCGTCGTATTTTTCGACTTCTTCCGCATAAATTTCAATTTTTAATAAAATTTTTCGCGTGTCTTCGTACCAAATAACCCATCCATAATCTTTGAGAGCCGCCACTGAATCTTCCAGAGCCAAATTCACTATAACAAGACCGATTCCGAGTTGGCCAATACGTGGATATTCCTGAAAATCGGAAAAATTTAAAAAAAATCTTTGTCAAAATTTAGAAAATTCAAAATTCTTGTAGTTTGTAGTCTAGCAGACCAATTTTTTAAATAAAGTTGAAAAATTCAAATTTTCGTAAAAATACACGGAAAAATCAGAAATTGATTGTTTTTTTTGTAGTTTGTAGTCTAAAAAATAGCACGTCCCACTATAAACTACAAAAGTTCAATTTTTAAAAAAGTGAAAAACAAAAAAAAATCAAAAATTTGCAATTTTTCAGAACATCCAAAAAAATTAAAAAATTTTGTTTTTTTTTTCGTTTTTTCTATAGAATTTTCGTGTAGTTTGTAGTCTATCAGTACCCGAATTTCGGCGAATTTCTCAATTTCCTCCCGAATCGATCCGAGTGCTCCTTTATAATCAGTCAATTGTAGTGATAATTTTGTGATTTGTTTCAAGAAATTGCTCGCCATTTTTGCACGATCCGATTGTTGGACCAAAGCCAATCCACGTTGGTAAATCTGCAAAAAAAATTGATTTTTTATCAATCGGCTGTGCATTTTCTCAGGAAATTTTGTGGAAAAACCACGGAAAATCGATTTTTTACCCAGAAAACTTGAAAAACACCATTTTCAGAGCTTTTATAGCCAAAAAATGCCGAGAATCCGAATATTTCCAGTTAAAAACGCAAAAAAAAAATCAAAATTTAGTCGAAAAATATGGGTCTGCTAAATACATTTTGTAGTTTGTAGTCTGGCAGACCCATTTGGTAAAAATCGTCAATTTTGCTCTAATTTTGAGCAATTTTCCAGATTTTTTGGCTGGATCACTCTCAATTATGCATTTTCTCGAAAATTTGCAGAAAAAAATCAATTTTCACATAGAAAATATGCATAAAATCACATTTTTCGCCAAAAAAACCGTCTAAAAACCCAAAAAAATACACATTTTCTGTGAGAAACGGAGTTTTGCCCTAAAAATCTGCTCATTTTCGTTTGAAAACTCAAAATTTTGTCGAAAAATGATGGG | ||||||
Mapping_target | CHROMOSOME_V | |||||||
Source_location | 225 | CHROMOSOME_V | 18039001 | 18058000 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00007062 | ||||||
WBGene00013343 | ||||||||
WBGene00013344 | ||||||||
WBGene00305845 | ||||||||
WBGene00305846 | ||||||||
WBGene00197676 | ||||||||
WBGene00200466 | ||||||||
WBGene00305847 | ||||||||
WBGene00044794 | ||||||||
Transcript | Y59A8B.29 | |||||||
Y59A8B.25.1 | ||||||||
Y59A8B.45 | ||||||||
Y59A8B.7.1 | ||||||||
Y59A8B.33 | ||||||||
Y59A8B.6.1 | ||||||||
Y59A8B.46 | ||||||||
Y59A8B.9.1 | ||||||||
Y59A8B.44 | ||||||||
Remark | The boundaries of this variant have been identified only approximately | |||||||
This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous | ||||||||
Method | WGS_Flibotte |