WormBase Tree Display for Variation: WBVar02111563
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WBVar02111563 | Name | Public_name | WBVar02111563 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00842146 | |||||||
T12B5.8.2:c.114-572_114-548delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | ||||||||
T12B5.9:n.520_529-1delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | ||||||||
T12B5.8.1:c.114-572_114-548delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | ||||||||
HGVSg | CHROMOSOME_III:g.942305_942329delinsCTCGAAAAGCAGCATATCCTTCGCGTCCCAGAA | |||||||
Sequence_details | SMap | S_parent | Sequence | T12B5 | ||||
Flanking_sequences | AGCCGTGATTGTTCTGTCTTGCGGAAGCAA | GCAGCACAGCAATCACTTCTTATTATGGAG | ||||||
Mapping_target | T12B5 | |||||||
Source_location | 225 | CHROMOSOME_III | 942294 | 942318 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | CTCGAAAAGCAGCATATCCTTCGCGTCCCAGAA | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00023345 | ||||||
WBGene00020455 | ||||||||
Transcript | T12B5.8.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | T12B5.8.2:c.114-572_114-548delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | |||||||
Intron_number | 2/6 | |||||||
T12B5.8.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | T12B5.8.1:c.114-572_114-548delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | |||||||
Intron_number | 2/5 | |||||||
Pseudogene | T12B5.9 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,non_coding_transcript_exon_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | T12B5.9:n.520_529-1delinsTTCTGGGACGCGAAGGATATGCTGCTTTTCGAG | |||||||
cDNA_position | 520-? | |||||||
Intron_number | 4/6 | |||||||
Exon_number | 4/7 | |||||||
Method | WGS_Flibotte |