WormBase Tree Display for Variation: WBVar02100998
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WBVar02100998 | Name | Public_name | WBVar02100998 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00831237 | |||||||
H10E21.3b.1:c.41_64delinsATCAAAATTCCAACTTT | ||||||||
CE19488:p.Thr14AsnfsTer16 | ||||||||
H10E21.3a.1:c.14-27_14-4delinsATCAAAATTCCAACTTT | ||||||||
HGVSg | CHROMOSOME_III:g.14690_14713delinsAAAGTTGGAATTTTGAT | |||||||
Sequence_details | SMap | S_parent | Sequence | H10E21 | ||||
Flanking_sequences | TTAGACATCGCGTGGAGCTGGAAGAAGCTG | TTTTTTTTCTAATTTCCAAATACCTACCTT | ||||||
Mapping_target | H10E21 | |||||||
Source_location | 225 | CHROMOSOME_III | 14690 | 14713 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | AAAGTTGGAATTTTGAT | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00003670 | ||||||
Transcript | H10E21.3b.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | H10E21.3b.1:c.41_64delinsATCAAAATTCCAACTTT | |||||||
HGVSp | CE19488:p.Thr14AsnfsTer16 | |||||||
cDNA_position | 41-64 | |||||||
CDS_position | 41-64 | |||||||
Protein_position | 14-22 | |||||||
Exon_number | 1/7 | |||||||
Codon_change | aCTGTAAAATCAAAATTCCGATTTCca/aATCAAAATTCCAACTTTca | |||||||
Amino_acid_change | TVKSKFRFP/NQNSNFX | |||||||
H10E21.3a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | H10E21.3a.1:c.14-27_14-4delinsATCAAAATTCCAACTTT | |||||||
Intron_number | 2/8 | |||||||
Method | WGS_Flibotte |