WormBase Tree Display for Variation: WBVar01933149
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WBVar01933149 | Name | Public_name | WBVar01933149 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00652607 | |||||||
T07D3.4b.1:c.179_183del | ||||||||
T07D3.4a.1:c.734_738del | ||||||||
CE51164:p.Tyr60Ter | ||||||||
CE13361:p.Tyr245Ter | ||||||||
HGVSg | CHROMOSOME_II:g.889951_889955del | |||||||
Sequence_details | SMap | S_parent | Sequence | T07D3 | ||||
Flanking_sequences | CGGTCTTTGCGAAGGATTATAACCCAATCT | GAATTACTTCACAGCTACTGGAATCCGTCT | ||||||
Mapping_target | T07D3 | |||||||
Source_location | 225 | CHROMOSOME_II | 889958 | 889962 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00020307 | ||||||
Transcript | T07D3.4b.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | T07D3.4b.1:c.179_183del | |||||||
HGVSp | CE51164:p.Tyr60Ter | |||||||
cDNA_position | 179-183 | |||||||
CDS_position | 179-183 | |||||||
Protein_position | 60-61 | |||||||
Exon_number | 1/4 | |||||||
Codon_change | tACGTG/t | |||||||
Amino_acid_change | YV/X | |||||||
T07D3.4a.1 | VEP_consequence | frameshift_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T07D3.4a.1:c.734_738del | |||||||
HGVSp | CE13361:p.Tyr245Ter | |||||||
cDNA_position | 877-881 | |||||||
CDS_position | 734-738 | |||||||
Protein_position | 245-246 | |||||||
Exon_number | 7/11 | |||||||
Codon_change | tACGTG/t | |||||||
Amino_acid_change | YV/X | |||||||
Method | WGS_Flibotte |