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WormBase Tree Display for Variation: WBVar01786826

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Name Class

WBVar01786826NamePublic_nameWBVar01786826
Other_name (11)
HGVSgCHROMOSOME_X:g.3556217C>T
Sequence_detailsSMapS_parentSequenceF56B6
Flanking_sequencesATTTCTGTAGTCACAGTTATTCTGACAATGTGTCCGTCACCTACCCAATGATTGCAAAAA
Mapping_targetF56B6
Source_location225CHROMOSOME_X35562043556204From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00023192From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00004350
TranscriptF56B6.2g.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF56B6.2g.1:c.4C>T
HGVSpCE42124:p.Leu2=
cDNA_position112
CDS_position4
Protein_position2
Exon_number2/7
Codon_changeCtg/Ttg
Amino_acid_changeL
F56B6.2e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2e.1:c.453-223C>T
Intron_number3/7
F56B6.2i.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2i.1:c.1944-223C>T
Intron_number12/16
F56B6.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2a.1:c.1938-223C>T
Intron_number12/16
F56B6.2h.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2h.1:c.1953-223C>T
Intron_number12/16
F56B6.2c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2c.1:c.753-223C>T
Intron_number6/9
F56B6.2j.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2j.1:c.1947-223C>T
Intron_number11/14
F56B6.2f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2f.1:c.200+112C>T
Intron_number2/6
F56B6.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF56B6.2b.1:c.1827-223C>T
Intron_number11/15
MethodWGS_Flibotte