WormBase Tree Display for Variation: WBVar01473935
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WBVar01473935 | Name | Public_name | yb1720 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | C17D12.2b.1:c.1063C>T | |||||||
C17D12.2c.1:c.769C>T | ||||||||
CE36103:p.Gln355Ter | ||||||||
CE50882:p.Gln355Ter | ||||||||
C17D12.2a.1:c.1063C>T | ||||||||
CE50761:p.Gln257Ter | ||||||||
CE50818:p.Gln257Ter | ||||||||
C17D12.2d.1:c.769C>T | ||||||||
HGVSg | CHROMOSOME_I:g.11598386C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | C17D12 | ||||
Flanking_sequences | CATGCACAAGTACATCAGCACCAGACTGCT | AGGTGACATCGACGGCTTCACATGCTCAGA | ||||||
Mapping_target | C17D12 | |||||||
Type_of_mutation | Substitution | c | t | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023519 | |||||||
Laboratory | KH | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00006807 | ||||||
Transcript | C17D12.2c.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | C17D12.2c.1:c.769C>T | |||||||
HGVSp | CE50818:p.Gln257Ter | |||||||
cDNA_position | 769 | |||||||
CDS_position | 769 | |||||||
Protein_position | 257 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
C17D12.2b.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C17D12.2b.1:c.1063C>T | |||||||
HGVSp | CE50882:p.Gln355Ter | |||||||
cDNA_position | 1063 | |||||||
CDS_position | 1063 | |||||||
Protein_position | 355 | |||||||
Exon_number | 6/8 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
C17D12.2a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C17D12.2a.1:c.1063C>T | |||||||
HGVSp | CE36103:p.Gln355Ter | |||||||
cDNA_position | 1119 | |||||||
CDS_position | 1063 | |||||||
Protein_position | 355 | |||||||
Exon_number | 7/11 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
C17D12.2d.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | C17D12.2d.1:c.769C>T | |||||||
HGVSp | CE50761:p.Gln257Ter | |||||||
cDNA_position | 769 | |||||||
CDS_position | 769 | |||||||
Protein_position | 257 | |||||||
Exon_number | 3/5 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
Isolation | Mutagen | EMS | ||||||
Genetics | Interpolated_map_position | I | 9.28515 | |||||
Description | Phenotype | WBPhenotype:0000643 | Person_evidence | WBPerson1686 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Unc | Person_evidence | WBPerson1686 | |||||
Curator_confirmed | WBPerson712 | |||||||
Penetrance | Complete | Person_evidence | WBPerson1686 | |||||
Curator_confirmed | WBPerson712 | |||||||
Recessive | Person_evidence | WBPerson1686 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Genotype | KH1720 unc-75 (yb1695) I; ybIs1622 [rgef-1::unc-32E7a-EGFP rgef-1::unc-32E7b-mRFP lin-15(+)]/+ | Person_evidence | WBPerson1686 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0002119 | Person_evidence | WBPerson1686 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | The ybIs1622 unc-32 exon 7 alternative splicing reporter expresses Green in the wild-type background but Red in this mutant. | Person_evidence | WBPerson1686 | |||||
Curator_confirmed | WBPerson712 | |||||||
Penetrance | Complete | Person_evidence | WBPerson1686 | |||||
Curator_confirmed | WBPerson712 | |||||||
Recessive | Person_evidence | WBPerson1686 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Genotype | KH1720 unc-75 (yb1695) I; ybIs1622 [rgef-1::unc-32E7a-EGFP rgef-1::unc-32E7b-mRFP lin-15(+)]/+ | Person_evidence | WBPerson1686 | ||||
Curator_confirmed | WBPerson712 | |||||||
Method | Substitution_allele |