WormBase Tree Display for Variation: WBVar01471761
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| WBVar01471761 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01471761 | ||||
| Other_name | cewivar00542946 | |||||
| CE03262:p.Gly227= | ||||||
| F16H9.2b.1:c.35-41207A>T | ||||||
| F16H9.2a.1:c.-23-41207A>T | ||||||
| F22E10.3.1:c.681A>T | ||||||
| HGVSg | CHROMOSOME_X:g.12748510T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | F22E10 | ||
| Flanking_sequences | GATAAGCATAGCAAATCCTCTGAGGAGCAC | CCAAGCTTATCTCCGATACCTTCACGAATT | ||||
| Mapping_target | F22E10 | |||||
| Type_of_mutation | Substitution | t | a | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00006690 | From_analysis | WGS_Andersen | |||
| WBStrain00006691 | From_analysis | WGS_Andersen | ||||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_Andersen | ||||||
| WBStrain00022888 | From_analysis | WGS_Andersen | ||||
| WBStrain00022889 | From_analysis | WGS_Andersen | ||||
| WBStrain00022894 | From_analysis | WGS_Andersen | ||||
| WBStrain00023065 | From_analysis | WGS_Andersen | ||||
| WBStrain00023085 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | Million_mutation_project_reanalysis | |||||
| WGS_Andersen | ||||||
| DB_info | Database | dbSNP_rs | rs | 193357063 | ||
| dbSNP_ss | ss | 295532982 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00004008 | ||||
| WBGene00008901 | ||||||
| Transcript | F16H9.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | F16H9.2b.1:c.35-41207A>T | |||||
| Intron_number | 1/3 | |||||
| F16H9.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | F16H9.2a.1:c.-23-41207A>T | |||||
| Intron_number | 1/4 | |||||
| F22E10.3.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F22E10.3.1:c.681A>T | |||||
| HGVSp | CE03262:p.Gly227= | |||||
| cDNA_position | 706 | |||||
| CDS_position | 681 | |||||
| Protein_position | 227 | |||||
| Exon_number | 5/10 | |||||
| Codon_change | ggA/ggT | |||||
| Amino_acid_change | G | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
