WormBase Tree Display for Variation: WBVar01429198
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| WBVar01429198 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01429198 | |||||
| Other_name | cewivar00004804 | ||||||
| Y105E8B.1r.1:c.240+2140A>G | |||||||
| Y105E8B.1f.1:c.240+2140A>G | |||||||
| Y105E8B.1s.1:c.240+2140A>G | |||||||
| Y105E8B.1q.1:c.240+2140A>G | |||||||
| Y105E8B.1a.1:c.240+2140A>G | |||||||
| Y105E8B.1p.1:c.240+2140A>G | |||||||
| Y105E8B.1o.1:c.240+2140A>G | |||||||
| Y105E8B.1d.1:c.240+2140A>G | |||||||
| Y105E8B.1g.1:c.240+2140A>G | |||||||
| HGVSg | CHROMOSOME_I:g.14627745T>C | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y105E8B | |||
| Flanking_sequences | AAATTTCCCGCATTTTTTGTAGATCAAACAGTAATGGGACAGCCTGACAC | AAAAGTAAGAAATTCCGCAATAAGCGCCTGAAAATGTCAAATAAAACCCC | |||||
| Mapping_target | Y105E8B | ||||||
| Type_of_mutation | Substitution | t | C | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain (11) | |||||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539135732 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00002978 | |||||
| Transcript | Y105E8B.1s.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1s.1:c.240+2140A>G | ||||||
| Intron_number | 3/8 | ||||||
| Y105E8B.1d.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1d.1:c.240+2140A>G | ||||||
| Intron_number | 4/11 | ||||||
| Y105E8B.1g.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1g.1:c.240+2140A>G | ||||||
| Intron_number | 4/9 | ||||||
| Y105E8B.1o.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1o.1:c.240+2140A>G | ||||||
| Intron_number | 4/10 | ||||||
| Y105E8B.1q.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1q.1:c.240+2140A>G | ||||||
| Intron_number | 3/8 | ||||||
| Y105E8B.1p.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1p.1:c.240+2140A>G | ||||||
| Intron_number | 3/8 | ||||||
| Y105E8B.1r.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1r.1:c.240+2140A>G | ||||||
| Intron_number | 3/8 | ||||||
| Y105E8B.1f.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1f.1:c.240+2140A>G | ||||||
| Intron_number | 4/10 | ||||||
| Y105E8B.1a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y105E8B.1a.1:c.240+2140A>G | ||||||
| Intron_number | 4/10 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
