WormBase Tree Display for Variation: WBVar01393732
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WBVar01393732 | Evidence | Paper_evidence | WBPaper00037807 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01393732 | ||||
Other_name | cewivar00670968 | |||||
F22D3.2e.1:c.1159-382_1159-381del | ||||||
F22D3.2g.1:c.1168-370_1168-369del | ||||||
F22D3.2d.1:c.1168-382_1168-381del | ||||||
F22D3.2c.1:c.-5_-4del | ||||||
F22D3.2j.1:c.1159-370_1159-369del | ||||||
HGVSg | CHROMOSOME_II:g.6944356_6944357del | |||||
Sequence_details | SMap | S_parent | Sequence | F22D3 | ||
Flanking_sequences | AAACTTGCACGCAGTAGACCGATTCAATATCCCGGTACAATATCAACTGA | AGTATGTGTATTGCTTCTGTATCATCATCTGTGGCTATTCAAAACGAAAA | ||||
Mapping_target | F22D3 | |||||
Type_of_mutation | Deletion | AG | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (17) | ||||||
Laboratory | AX | |||||
Analysis | WGS_De_Bono | |||||
Million_mutation_project_reanalysis | ||||||
DB_info | Database | dbSNP_ss | ss | 539113155 | ||
Status | Live | |||||
Affects | Gene | WBGene00017699 | ||||
Transcript | F22D3.2g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | F22D3.2g.1:c.1168-370_1168-369del | |||||
Intron_number | 14/18 | |||||
F22D3.2e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F22D3.2e.1:c.1159-382_1159-381del | |||||
Intron_number | 14/18 | |||||
F22D3.2c.1 | VEP_consequence | 5_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F22D3.2c.1:c.-5_-4del | |||||
cDNA_position | 52-53 | |||||
Exon_number | 1/7 | |||||
F22D3.2d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F22D3.2d.1:c.1168-382_1168-381del | |||||
Intron_number | 14/18 | |||||
F22D3.2j.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F22D3.2j.1:c.1159-370_1159-369del | |||||
Intron_number | 14/18 | |||||
Reference | WBPaper00037807 | |||||
Method | WGS_De_Bono |