WormBase Tree Display for Variation: WBVar01392813
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| WBVar01392813 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01392813 | ||||
| Other_name (11) | ||||||
| HGVSg | CHROMOSOME_I:g.14621441del | |||||
| Sequence_details | SMap | S_parent | Sequence | Y105E8B | ||
| Flanking_sequences | AGAAAATAGGAAAGTTTGAGTGGTTTTGATGGTTTCAAAGGTTTTTGGGT | GGGGGGATAAGATGTTGTGACGAAAATACAAGTAGGCGGGGGGAAAAAAG | ||||
| Mapping_target | Y105E8B | |||||
| Type_of_mutation | Deletion | G | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | ||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539112328 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00002978 | ||||
| Transcript | Y105E8B.1l.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1l.1:c.*73del | |||||
| cDNA_position | 856 | |||||
| Exon_number | 9/9 | |||||
| Y105E8B.1k.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1k.1:c.*73del | |||||
| cDNA_position | 844 | |||||
| Exon_number | 8/8 | |||||
| Y105E8B.1c.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1c.1:c.*281del | |||||
| cDNA_position | 1053 | |||||
| Exon_number | 10/10 | |||||
| Y105E8B.1d.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1d.1:c.*281del | |||||
| cDNA_position | 1271 | |||||
| Exon_number | 12/12 | |||||
| Y105E8B.1b.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1b.1:c.*281del | |||||
| cDNA_position | 873 | |||||
| Exon_number | 9/9 | |||||
| Y105E8B.1o.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1o.1:c.*73del | |||||
| cDNA_position | 981 | |||||
| Exon_number | 11/11 | |||||
| Y105E8B.1t.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1t.1:c.*281del | |||||
| cDNA_position | 1053 | |||||
| Exon_number | 10/10 | |||||
| Y105E8B.1e.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1e.1:c.*159del | |||||
| cDNA_position | 931 | |||||
| Exon_number | 10/10 | |||||
| Y105E8B.1f.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1f.1:c.*315del | |||||
| cDNA_position | 836 | |||||
| Exon_number | 11/11 | |||||
| Y105E8B.1a.1 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y105E8B.1a.1:c.*73del | |||||
| cDNA_position | 981 | |||||
| Exon_number | 11/11 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
