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WormBase Tree Display for Variation: WBVar01369669

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Name Class

WBVar01369669EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar01369669
Other_namecewivar00089445
F53C3.13c.1:c.957-217G>A
F53C3.13b.1:c.957-1328G>A
F53C3.13d.1:c.*36-217G>A
F53C3.13f.1:c.963-1894G>A
F53C3.13a.1:c.957-477G>A
F53C3.13e.1:c.957-1894G>A
F53C3.13d.2:c.*714G>A
HGVSgCHROMOSOME_II:g.3922280C>T
Sequence_detailsSMapS_parentSequenceF53C3
Flanking_sequencesGGTGGACTGAAAGGTGGTGCAGTCGAAATTGTCAGAAAACGCCGAAAAATATAATGAAACTTATTGAAAACTTCTCCAACAAAAAAGTTGTGGCGGGGGT
Mapping_targetF53C3
Type_of_mutationSubstitutioncTPaper_evidenceWBPaper00037807
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (24)
LaboratoryAX
AnalysisWGS_De_Bono
Million_mutation_project_reanalysis
DB_infoDatabasedbSNP_ssss539045071
StatusLive
AffectsGeneWBGene00018756
TranscriptF53C3.13e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13e.1:c.957-1894G>A
Intron_number5/6
F53C3.13b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13b.1:c.957-1328G>A
Intron_number5/6
F53C3.13d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13d.1:c.*36-217G>A
Intron_number7/7
F53C3.13a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13a.1:c.957-477G>A
Intron_number5/6
F53C3.13d.2VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF53C3.13d.2:c.*714G>A
cDNA_position1914
Exon_number7/7
F53C3.13f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13f.1:c.963-1894G>A
Intron_number5/6
F53C3.13c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF53C3.13c.1:c.957-217G>A
Intron_number5/6
ReferenceWBPaper00037807
MethodWGS_De_Bono