WormBase Tree Display for Variation: WBVar01322853
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| WBVar01322853 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01322853 | |||||
| Other_name | cewivar00397468 | ||||||
| T12B5.9:n.201G>A | |||||||
| T12B5.8.2:c.113+680G>A | |||||||
| T12B5.8.1:c.113+680G>A | |||||||
| HGVSg | CHROMOSOME_III:g.942666C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | T12B5 | |||
| Flanking_sequences | CTACATTGGAACTATGTTGCCAATTCACGTGTAGTTTCATCCGGCTTCTC | CTCACGGCGGCTCGCAACTGATCATCATGAGAGAAGGCCTTTCTGAGCGG | |||||
| Mapping_target | T12B5 | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
| WGS_De_Bono | |||||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539178847 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00023345 | |||||
| WBGene00020455 | |||||||
| Transcript | T12B5.8.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T12B5.8.2:c.113+680G>A | ||||||
| Intron_number | 2/6 | ||||||
| T12B5.8.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T12B5.8.1:c.113+680G>A | ||||||
| Intron_number | 2/5 | ||||||
| Pseudogene | T12B5.9 | VEP_consequence | non_coding_transcript_exon_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | T12B5.9:n.201G>A | ||||||
| cDNA_position | 201 | ||||||
| Exon_number | 2/7 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
