WormBase Tree Display for Variation: WBVar01279881
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WBVar01279881 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01279881 | |||||
Other_name | cewivar00490571 | ||||||
Y23H5A.5d.1:c.*77-433A>C | |||||||
Y23H5A.5d.2:c.*1-433A>C | |||||||
Y23H5A.5d.3:c.*142-433A>C | |||||||
Y23H5A.5a.1:c.2421-433A>C | |||||||
HGVSg | CHROMOSOME_I:g.2616658A>C | ||||||
Sequence_details | SMap | S_parent | Sequence | Y23H5A | |||
Flanking_sequences | ACAAGAAGCAGGTAGGCAGGCATTGGATAGGCAAGTAGGTAGGTATAGAA | CAAGCATGTGCAAGCCAGACGGAAACTTAATGAAACTACATGGAGTAGGT | |||||
Mapping_target | Y23H5A | ||||||
Type_of_mutation | Substitution | a | C | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_De_Bono | |||||||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539140173 | |||
Status | Live | ||||||
Affects | Gene | WBGene00000832 | |||||
Transcript | Y23H5A.5d.3 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y23H5A.5d.3:c.*142-433A>C | ||||||
Intron_number | 15/15 | ||||||
Y23H5A.5d.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y23H5A.5d.2:c.*1-433A>C | ||||||
Intron_number | 14/14 | ||||||
Y23H5A.5a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y23H5A.5a.1:c.2421-433A>C | ||||||
Intron_number | 14/15 | ||||||
Y23H5A.5d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y23H5A.5d.1:c.*77-433A>C | ||||||
Intron_number | 15/15 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |