WormBase Tree Display for Variation: WBVar01238150
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WBVar01238150 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01238150 | |||||
Other_name | cewivar00012126 | ||||||
F53C3.13d.1:c.*36-319G>A | |||||||
F53C3.13a.1:c.957-579G>A | |||||||
F53C3.13f.1:c.963-1996G>A | |||||||
F53C3.13e.1:c.957-1996G>A | |||||||
F53C3.13d.2:c.*612G>A | |||||||
F53C3.13c.1:c.957-319G>A | |||||||
F53C3.13b.1:c.957-1430G>A | |||||||
HGVSg | CHROMOSOME_II:g.3922382C>T | ||||||
Sequence_details | SMap | S_parent | Sequence | F53C3 | |||
Flanking_sequences | CAAAAAATAACCCAAATCCAGTTGAAATTTGAAAATTGACCGACATGTCA | AGCGTCTGGAAACTTACTTTTTAAAGATCACCGTCTAATTTTGGTAATGC | |||||
Mapping_target | F53C3 | ||||||
Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (13) | |||||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539076279 | |||
History | Acquires_merge | WBVar01304460 | |||||
Status | Live | ||||||
Affects | Gene | WBGene00018756 | |||||
Transcript | F53C3.13e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13e.1:c.957-1996G>A | ||||||
Intron_number | 5/6 | ||||||
F53C3.13b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13b.1:c.957-1430G>A | ||||||
Intron_number | 5/6 | ||||||
F53C3.13d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13d.1:c.*36-319G>A | ||||||
Intron_number | 7/7 | ||||||
F53C3.13a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13a.1:c.957-579G>A | ||||||
Intron_number | 5/6 | ||||||
F53C3.13d.2 | VEP_consequence | 3_prime_UTR_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13d.2:c.*612G>A | ||||||
cDNA_position | 1812 | ||||||
Exon_number | 7/7 | ||||||
F53C3.13f.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13f.1:c.963-1996G>A | ||||||
Intron_number | 5/6 | ||||||
F53C3.13c.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | F53C3.13c.1:c.957-319G>A | ||||||
Intron_number | 5/6 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |