WormBase Tree Display for Variation: WBVar00603616
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WBVar00603616 | Name | Public_name | WBVar00603616 | |||
---|---|---|---|---|---|---|
Other_name | oicr_ce2035 | |||||
cewivar00489065 | ||||||
CE27131:p.Ala288= | ||||||
F17E5.1a.1:c.864G>A | ||||||
HGVSg | CHROMOSOME_X:g.12410057C>T | |||||
Sequence_details | SMap | S_parent | Sequence | F17E5 | ||
Flanking_sequences | TATTCCTACCTTCAATTTTCTTGATTCATTGTACCTTCGCATCTGATCAATGACGTCATTCATGTGTTTTCTGCT | GCCATGTGTTCTTTATCTCTGATCCATTCATGGTTCAGAGCCTAAAAGTTGAATTGTTTCATTTTTCAATTTCAT | ||||
Mapping_target | F17E5 | |||||
Type_of_mutation | Substitution | c | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027649 | From_analysis | WGS_Stein | ||||
Analysis | WGS_Stein | |||||
Million_mutation_project_reanalysis | ||||||
DB_info | Database | dbSNP_ss | ss | ss477720833 | ||
Status | Live | |||||
Affects | Gene | WBGene00002991 | ||||
Transcript | F17E5.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | F17E5.1a.1:c.864G>A | |||||
HGVSp | CE27131:p.Ala288= | |||||
cDNA_position | 880 | |||||
CDS_position | 864 | |||||
Protein_position | 288 | |||||
Exon_number | 9/26 | |||||
Codon_change | gcG/gcA | |||||
Amino_acid_change | A | |||||
Remark | validatation rate is over 97% | |||||
Method | WGS_Stein |