WormBase Tree Display for Variation: WBVar00602556

WBVar00602556 Name: Public_name: WBVar00602556
    Other_name: oicr_ce975
      cewivar00467977
      CE19488:p.Gln132=
      H10E21.3a.1:c.342G>A
      H10E21.3b.1:c.396G>A
      CE28733:p.Gln114=
    HGVSg: CHROMOSOME_III:g.13920C>T
  Sequence_details: SMap: S_parent: Sequence: H10E21
    Flanking_sequences: CAAGCTATTTGGCTCCTGAACCTCAATTTTAGGAACCTTAACCCCCTCCACCACGAGCTTCTGCTCGTCAGCCGT TGCGGGGACACATTCGCGAATTTCTTATTTCTCTTGAGCCCTGATTTTGTGAAAAATGCTCTTCCGGTTTCAATG
    Mapping_target: H10E21
    Type_of_mutation: Substitution: c t
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023191 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027649 From_analysis: WGS_Stein
    Analysis: WGS_Stein
      Million_mutation_project_reanalysis
    DB_info: Database: dbSNP_ss ss ss477719410
    Status: Live
  Affects: Gene: WBGene00003670
    Transcript: H10E21.3b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: H10E21.3b.1:c.396G>A
        HGVSp: CE19488:p.Gln132=
        cDNA_position: 396
        CDS_position: 396
        Protein_position: 132
        Exon_number: 2/7
        Codon_change: caG/caA
        Amino_acid_change: Q
      H10E21.3a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: H10E21.3a.1:c.342G>A
        HGVSp: CE28733:p.Gln114=
        cDNA_position: 458
        CDS_position: 342
        Protein_position: 114
        Exon_number: 4/9
        Codon_change: caG/caA
        Amino_acid_change: Q
  Remark: validatation rate is over 97%
  Method: WGS_Stein