WormBase Tree Display for Variation: WBVar00601379

WBVar00601379 Evidence: Paper_evidence: WBPaper00040097
  Name: Public_name: WBVar00601379
    Other_name: LSJ2_98
      cewivar00636243
      CE51760:p.Lys2380AsnfsTer7
      F25F2.2.1:c.7137del
    HGVSg: CHROMOSOME_III:g.4530487del
  Sequence_details: SMap: S_parent: Sequence: F25F2
    Flanking_sequences: AAGAAAGTTCTGAACGTTTCTGTTACTGATGGAATGTTCACTGCTTATGC AAAACTTGTCGTTGAGATCTTGAGGAAGCGGTTCGATGCAGCCTCCTCCA
    Mapping_target: F25F2
    Type_of_mutation: Deletion: A
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (41)
    Laboratory: CX
    Analysis: WGS_McGrath
      Million_mutation_project_reanalysis
    DB_info: Database: dbSNP_ss ss 472333452
        dbSNP_rs rs 193929463
    Status: Live
  Affects: Gene: WBGene00000396
    Transcript: F25F2.2.1 VEP_consequence: frameshift_variant,splice_region_variant
        VEP_impact: HIGH
        HGVSc: F25F2.2.1:c.7137del
        HGVSp: CE51760:p.Lys2380AsnfsTer7
        cDNA_position: 7239
        CDS_position: 7137
        Protein_position: 2379
        Exon_number: 14/23
        Codon_change: gcA/gc
        Amino_acid_change: A/X
  Reference: WBPaper00040097
  Method: WGS_McGrath