Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00317392

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00317392NamePublic_nametm5166
Other_nameY62E10A.12a.2:c.46_162del
Y62E10A.12a.1:c.46_162del
CE28143:p.Glu16_Ter54delextTer?
HGVSgCHROMOSOME_IV:g.13387514_13387686del
Sequence_detailsSMapS_parentSequenceY62E10A
Flanking_sequencesaaagaagtgacactgtctgctacagtcgaatcggaggtttgtcgttgttgaaaagtttta
Mapping_targetY62E10A
Source_location7CHROMOSOME_IV1338751313387687Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm5166_external
tm5166_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004795
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq5166
NBP_allele
StatusLive
AffectsGeneWBGene00003077
TranscriptY62E10A.12a.2 (11)
Y62E10A.12a.1 (11)
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotype (11)
Phenotype_not_observedWBPhenotype:0000028Paper_evidenceWBPaper00047010
Curator_confirmedWBPerson557
RemarkLSM-3 is not required for constitutive splicing.Paper_evidenceWBPaper00047010
Curator_confirmedWBPerson557
Variation_effectPredicted_null_via_sequencePaper_evidenceWBPaper00047010
Curator_confirmedWBPerson557
WBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
ReferenceWBPaper00047010
Remark28684/28685-28857/28858 (173 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele