WormBase Tree Display for Gene: WBGene00003077

WBGene00003077 Evidence: Person_evidence: WBPerson1846
  SMap: S_parent: Sequence: Y62E10A
  Identity: Version: 1
    Name: CGC_name: lsm-3
      Sequence_name: Y62E10A.12
      Molecular_name: Y62E10A.12a
        Y62E10A.12a.1
        CE28143
        Y62E10A.12b
        CE49906
        Y62E10A.12a.2
        Y62E10A.12b.1
      Other_name: CELE_Y62E10A.12 Accession_evidence: NDB BX284604
      Public_name: lsm-3
    DB_info: Database: AceView gene 4O153
        WormQTL gene WBGene00003077
        WormFlux gene WBGene00003077
        NDB locus_tag CELE_Y62E10A.12
        Panther gene CAEEL|WormBase=WBGene00003077|UniProtKB=Q9U1W8
          family PTHR13110
        NCBI gene 178303
        RefSeq protein NM_001306962.1
            NM_070178.7
        TrEMBL UniProtAcc A0A061AIX6
            Q9U1W8
        UniProt_GCRP UniProtAcc Q9U1W8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lsm
    Allele (46)
    Strain: WBStrain00033284
      WBStrain00004795
    RNASeq_FPKM (74)
    GO_annotation (25)
    Contained_in_operon: CEOP4548
    Ortholog (35)
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and mRNA splicing, via spliceosome. Located in P-body. Is an ortholog of human LSM3 (LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y62E10A.12a
      Y62E10A.12b
    Corresponding_CDS_history: Y62E10A.12:wp52
    Corresponding_transcript: Y62E10A.12a.1
      Y62E10A.12a.2
      Y62E10A.12b.1
    Other_sequence (49)
    Associated_feature: WBsf229431
      WBsf229432
  Experimental_info: RNAi_result: WBRNAi00083666 Inferred_automatically: RNAi_primary
      WBRNAi00037668 Inferred_automatically: RNAi_primary
      WBRNAi00117313 Inferred_automatically: RNAi_primary
      WBRNAi00117304 Inferred_automatically: RNAi_primary
      WBRNAi00083850 Inferred_automatically: RNAi_primary
      WBRNAi00057844 Inferred_automatically: RNAi_primary
      WBRNAi00117283 Inferred_automatically: RNAi_primary
      WBRNAi00094393 Inferred_automatically: RNAi_primary
      WBRNAi00021220 Inferred_automatically: RNAi_primary
      WBRNAi00117293 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024012
      Expr1031452
      Expr1161277
      Expr2013290
      Expr2031521
    Drives_construct: WBCnstr00036246
    Construct_product: WBCnstr00036246
    Microarray_results (34)
    Expression_cluster (86)
    SAGE_tag: SAGE:gttttatcgg Strand: Sense
        Unambiguously_mapped
      SAGE:gttttatcggaggttga Strand: Sense
        Unambiguously_mapped
      SAGE:ttcaaatgtt Strand: Antisense
      SAGE:ttcaaatgttgatcgaa Strand: Antisense
    Interaction (112)
  Map_info: Map: IV Position: 8.87458 Error: 0.008632
    Positive: Positive_clone: Y62E10A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032091
    WBPaper00038491
    WBPaper00046572
    WBPaper00047010
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene