WormBase Tree Display for Variation: WBVar00302762
expand all nodes | collapse all nodes | view schema
| WBVar00302762 | Evidence | Paper_evidence | WBPaper00036201 | ||
|---|---|---|---|---|---|
| Name | Public_name | otn5941 | |||
| Other_name | OH6087_694820 | ||||
| CE14964:p.Ile578= | |||||
| Y57G11C.22a.1:c.101-2447A>T | |||||
| Y57G11C.20.1:c.1734A>T | |||||
| HGVSg | CHROMOSOME_IV:g.14845095A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y57G11C | |
| Flanking_sequences | TTCGGTAACGTTAGCACAATCTATCTTTATTGTGATATTGTAGACCCTAT | ATCGTGGGAGATTCTAAAAATTCGCTACTGTCTGTAATTCCCTGTAAAGG | |||
| Mapping_target | Y57G11C | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00029489 | ||||
| Laboratory | OTN | ||||
| Analysis | WGS_Hobert | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00013315 | |||
| WBGene00013317 | |||||
| Transcript | Y57G11C.20.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y57G11C.20.1:c.1734A>T | ||||
| HGVSp | CE14964:p.Ile578= | ||||
| cDNA_position | 1734 | ||||
| CDS_position | 1734 | ||||
| Protein_position | 578 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | atA/atT | ||||
| Amino_acid_change | I | ||||
| Y57G11C.22a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y57G11C.22a.1:c.101-2447A>T | ||||
| Intron_number | 2/7 | ||||
| Genetics | Map | IV | |||
| Reference | WBPaper00036201 | ||||
| Method | WGS_Hobert |
