WormBase Tree Display for Variation: WBVar00296618

WBVar00296618 Name: Public_name: ok2876
    Other_name: K10D6.2d.1:c.319_726-9del
      K10D6.2a.1:c.319_672-292del
      K10D6.2c.4:c.319_672-9del
      K10D6.2b.2:c.319_725+223del
      K10D6.2c.1:c.319_672-9del
      K10D6.2c.2:c.319_672-9del
      K10D6.2b.1:c.319_725+223del
      K10D6.2c.3:c.319_672-9del
    HGVSg: CHROMOSOME_V:g.11194351_11195174del
  Sequence_details: SMap: S_parent: Sequence: K10D6
    Flanking_sequences: ctgacgacgatcttcgtatcttctgaaaac gtgatgttctgattctccagcagctccatc
    Mapping_target: K10D6
    Type_of_mutation: Deletion
    PCR_product: ok2876_external
      ok2876_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037210
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00010742
    Transcript: K10D6.2b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2b.2:c.319_725+223del
        cDNA_position: 330-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 3-5/6
        Exon_number: 3-5/7
      K10D6.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2a.1:c.319_672-292del
        cDNA_position: 330-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 3-4/5
        Exon_number: 3-4/6
      K10D6.2c.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2c.4:c.319_672-9del
        cDNA_position: 327-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 3-4/6
        Exon_number: 3-4/7
      K10D6.2c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2c.1:c.319_672-9del
        cDNA_position: 425-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
      K10D6.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2b.1:c.319_725+223del
        cDNA_position: 420-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 4-6/7
        Exon_number: 4-6/8
      K10D6.2c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2c.2:c.319_672-9del
        cDNA_position: 330-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 3-4/5
        Exon_number: 3-4/6
      K10D6.2c.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2c.3:c.319_672-9del
        cDNA_position: 330-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 3-4/6
        Exon_number: 3-4/7
      K10D6.2d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K10D6.2d.1:c.319_726-9del
        cDNA_position: 319-?
        CDS_position: 319-?
        Protein_position: 107-?
        Intron_number: 2-4/4
        Exon_number: 2-4/5
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele