WormBase Tree Display for Variation: WBVar00276580

WBVar00276580 Evidence: Paper_evidence: WBPaper00036200
  Name: Public_name: gk933
    Other_name (16)
    HGVSg: CHROMOSOME_II:g.11059682G>A
  Sequence_details: SMap: S_parent: Sequence: F45E10
    Flanking_sequences: ACAGTAACCTTGATTGAGTTGCAGCCAGAG ATCGTTTCGAAGATTGACTAGCTGATGTAC
    Mapping_target: F45E10
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036970
    Laboratory: VC
    Person: WBPerson427
    Analysis: Million_Mutation_Pilot_Project
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00006788
    Transcript: F45E10.1b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1b.1:c.3347C>T
        HGVSp: CE31347:p.Ser1116Phe
        cDNA_position: 3347
        CDS_position: 3347
        Protein_position: 1116
        Exon_number: 21/23
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1a.1:c.3449C>T
        HGVSp: CE31346:p.Ser1150Phe
        cDNA_position: 3490
        CDS_position: 3449
        Protein_position: 1150
        Exon_number: 22/24
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1f.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1f.1:c.2738C>T
        HGVSp: CE43986:p.Ser913Phe
        cDNA_position: 2738
        CDS_position: 2738
        Protein_position: 913
        Exon_number: 15/16
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1c.1:c.3662C>T
        HGVSp: CE33783:p.Ser1221Phe
        cDNA_position: 3662
        CDS_position: 3662
        Protein_position: 1221
        Exon_number: 22/24
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1e.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1e.1:c.2402C>T
        HGVSp: CE34020:p.Ser801Phe
        cDNA_position: 2402
        CDS_position: 2402
        Protein_position: 801
        Exon_number: 14/15
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1d.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1d.1:c.3260C>T
        HGVSp: CE34019:p.Ser1087Phe
        cDNA_position: 3457
        CDS_position: 3260
        Protein_position: 1087
        Exon_number: 20/21
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1g.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1g.1:c.3539C>T
        HGVSp: CE44133:p.Ser1180Phe
        cDNA_position: 3539
        CDS_position: 3539
        Protein_position: 1180
        Exon_number: 21/22
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
      F45E10.1h.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: F45E10.1h.1:c.3326C>T
        HGVSp: CE44088:p.Ser1109Phe
        cDNA_position: 3326
        CDS_position: 3326
        Protein_position: 1109
        Exon_number: 20/22
        Codon_change: tCc/tTc
        Amino_acid_change: S/F
  Isolation: Mutagen: EMS
  Reference: WBPaper00036200
  Remark: Allele identified through whole-genome sequencing by the Gene Knockout Consortium Paper_evidence: WBPaper00036200
    Allele confirmed by Sanger sequencing
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele