WormBase Tree Display for Variation: WBVar00275474
expand all nodes | collapse all nodes | view schema
WBVar00275474 | Evidence | Paper_evidence | WBPaper00026825 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | zh20 | |||||||
Other_name | F57C7.3b.1:c.33_688+3del | ||||||||
F57C7.3a.1:c.33_691+3del | |||||||||
HGVSg | CHROMOSOME_X:g.10591989_10593246del | ||||||||
Sequence_details | SMap | S_parent | Sequence | F57C7 | |||||
Flanking_sequences | gattctgaaactcaatttctgcctgtcgac | tgtgtgaagcaaaactcatttcaattaatt | |||||||
Mapping_target | F57C7 | ||||||||
Type_of_mutation | Deletion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00000144 | ||||||||
Laboratory | AH | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00004749 | |||||||
Transcript | F57C7.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F57C7.3a.1:c.33_691+3del | ||||||||
cDNA_position | 89-? | ||||||||
CDS_position | 33-? | ||||||||
Protein_position | 11-? | ||||||||
Intron_number | 2-6/7 | ||||||||
Exon_number | 2-6/8 | ||||||||
F57C7.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F57C7.3b.1:c.33_688+3del | ||||||||
cDNA_position | 89-? | ||||||||
CDS_position | 33-? | ||||||||
Protein_position | 11-? | ||||||||
Intron_number | 2-6/7 | ||||||||
Exon_number | 2-6/8 | ||||||||
Interactor | WBInteraction000521943 | ||||||||
WBInteraction000524031 | |||||||||
WBInteraction000524032 | |||||||||
WBInteraction000524555 | |||||||||
WBInteraction000524820 | |||||||||
WBInteraction000524822 | |||||||||
Isolation | Mutagen | EMS | |||||||
Genetics | Interpolated_map_position | X | 2.31377 | ||||||
Description | Phenotype (14) | ||||||||
Phenotype_not_observed | WBPhenotype:0000062 | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Non-lethal | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Null | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000604 | Paper_evidence | WBPaper00026825 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | The nervous system is grossly intact in all mutants | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Null | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0005735 | PATO:0000460 | Paper_evidence | WBPaper00026825 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | DiI staining | Paper_evidence | WBPaper00026825 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Genotype | oyIs17, zdIs5, otIs39, evIs82b, rhIs4 | Paper_evidence | WBPaper00026825 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Reference | WBPaper00031671 | ||||||||
WBPaper00032413 | |||||||||
WBPaper00026825 | |||||||||
WBPaper00045926 | |||||||||
Method | Deletion_allele |