WormBase Tree Display for Variation: WBVar00275459
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| WBVar00275459 | Evidence | Paper_evidence | WBPaper00006104 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | zd85 | |||||
| Other_name | CE34546:p.Gln380Ter | ||||||
| F28F9.1.1:c.1138C>T | |||||||
| HGVSg | CHROMOSOME_IV:g.3859747C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F28F9 | |||
| Flanking_sequences | agccctgagaagctcatcggcttcctcgac | agactggtggagtgatccaggagttgctgc | |||||
| Mapping_target | F28F9 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00006104 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00034086 | ||||||
| Laboratory | SK | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006970 | |||||
| Transcript | F28F9.1.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F28F9.1.1:c.1138C>T | ||||||
| HGVSp | CE34546:p.Gln380Ter | ||||||
| cDNA_position | 1145 | ||||||
| CDS_position | 1138 | ||||||
| Protein_position | 380 | ||||||
| Exon_number | 6/9 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000501948 | ||||||
| WBInteraction000501949 | |||||||
| WBInteraction000501950 | |||||||
| WBInteraction000541888 | |||||||
| Genetics | Interpolated_map_position | IV | -2.06 | ||||
| Reference | WBPaper00006104 | ||||||
| Method | Substitution_allele |
