WormBase Tree Display for Variation: WBVar00274875

WBVar00274875 Evidence: Paper_evidence: WBPaper00005369
  Name: Public_name: WBVar00274875
    Other_name: uCE6-1622
      CE53541:p.Phe30LeufsTer11
      T25D1.3.2:c.90del
      T25D1.3.1:c.90del
    HGVSg: CHROMOSOME_X:g.16506066del
  Sequence_details: SMap: S_parent: Sequence: T25D1
    Flanking_sequences: TTTCAGAAACCATGAACCTGGAAAATCTACCTTCAGTTGTCCATCGAAAACTGTTCAAAATGTTTGACGCATGTGATTTATTCTTTTTATCAATTACTTT GGCAACATCAAAGAGACTATTCAAAAGATGAACTTGGACATTTCCGATATTGCAATGGACATGACTGCAAAAAGGAAATTGTTCTTGTTAAAGATTCAGT
    Mapping_target: T25D1
    Type_of_mutation: Deletion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Swan
    Analysis: SNP_Swan
    Status: Live
  Affects: Gene: WBGene00020795
    Transcript: T25D1.3.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: T25D1.3.1:c.90del
        HGVSp: CE53541:p.Phe30LeufsTer11
        cDNA_position: 419
        CDS_position: 90
        Protein_position: 30
        Exon_number: 2/6
        Codon_change: ttT/tt
        Amino_acid_change: F/X
      T25D1.3.2 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: T25D1.3.2:c.90del
        HGVSp: CE53541:p.Phe30LeufsTer11
        cDNA_position: 90
        CDS_position: 90
        Protein_position: 30
        Exon_number: 1/4
        Codon_change: ttT/tt
        Amino_acid_change: F/X
  Reference: WBPaper00005369
  Method: SNP_Swan