WormBase Tree Display for Variation: WBVar00273570
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| WBVar00273570 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00273570 | |||
| Other_name | uCE5-3097 | ||||
| cewivar00264525 | |||||
| Y60A3A.11:n.2019A>G | |||||
| Y60A3A.10.1:c.822-2346T>C | |||||
| Y60A3A.10.2:c.822-2346T>C | |||||
| HGVSg | CHROMOSOME_V:g.19938544A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y60A3A | |
| Flanking_sequences | TTCCTACTTTGAATCACAATATACAAATCAAAGAATCACTAATCTTGCTTTACCTGACGATTTTACATCTGATCAACCAATCCCATGAGTTACAGACGAA | AAGTGTTAAAAGTTATCATGTCCTCTAAAAAGTCGTGCTCTATTACGAGCGACCAGGTACCATTTACGTTTATTAAAATACTATCACCTCTCATCAGTAG | |||
| Mapping_target | Y60A3A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00014933 | |||
| WBGene00000987 | |||||
| Transcript | Y60A3A.10.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y60A3A.10.2:c.822-2346T>C | ||||
| Intron_number | 5/7 | ||||
| Y60A3A.10.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y60A3A.10.1:c.822-2346T>C | ||||
| Intron_number | 5/7 | ||||
| Pseudogene | Y60A3A.11 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y60A3A.11:n.2019A>G | ||||
| cDNA_position | 2019 | ||||
| Exon_number | 1/1 | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
