WormBase Tree Display for Variation: WBVar00272076
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| WBVar00272076 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00272076 | |||
| Other_name (18) | |||||
| HGVSg | CHROMOSOME_V:g.6177642T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y38B5A | |
| Flanking_sequences | cacaggtgcaagtttctcctttgttggttcgaaagtagttgcagtagtctctggcacttgaacatctttgtgctcgacaatttcagctggttgtacttcagatgtttcctttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggcacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggcacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttttcaactgttggttcgacagtaggtgaactagtctctggcacttgaacatctttgtgctcgacaatttcagctggttgtacttcagatgtttcctttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggcacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagttt | tcaactgttggttcgacagtaggtgcactagtctctggcactgaaacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttctcaattgttggttcgacagtaggtgcactagtctctggcactgaaacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttctcaattgttggttcgacagtaggtgcactagtctctggcactggaacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggaacatccttttgctcaacaatttcagctggttctacttcagatgtttcttttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggcacatccttttgctcaacaatttcagctggttctacttcagatgttttctttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactagtctctggcactggcaaatccttttgctcaacaatttcagctggttctacttcagatgtttcctttgattccacaggtgcaagtttctcaactgttggttcgacagtaggtgcactag | |||
| Mapping_target | Y38B5A | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| Analysis | SNP_Swan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006436 | |||
| Transcript | W06H8.8f.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8f.1:c.15270A>G | ||||
| HGVSp | CE52428:p.Glu5090= | ||||
| cDNA_position | 15270 | ||||
| CDS_position | 15270 | ||||
| Protein_position | 5090 | ||||
| Exon_number | 25/60 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8b.1:c.13992A>G | ||||
| HGVSp | CE52423:p.Glu4664= | ||||
| cDNA_position | 14085 | ||||
| CDS_position | 13992 | ||||
| Protein_position | 4664 | ||||
| Exon_number | 25/58 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8a.1:c.15270A>G | ||||
| HGVSp | CE52437:p.Glu5090= | ||||
| cDNA_position | 15363 | ||||
| CDS_position | 15270 | ||||
| Protein_position | 5090 | ||||
| Exon_number | 26/61 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8i.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8i.1:c.13992A>G | ||||
| HGVSp | CE52442:p.Glu4664= | ||||
| cDNA_position | 13992 | ||||
| CDS_position | 13992 | ||||
| Protein_position | 4664 | ||||
| Exon_number | 24/57 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8a.2:c.15270A>G | ||||
| HGVSp | CE52437:p.Glu5090= | ||||
| cDNA_position | 15363 | ||||
| CDS_position | 15270 | ||||
| Protein_position | 5090 | ||||
| Exon_number | 26/60 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8h.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8h.1:c.15270A>G | ||||
| HGVSp | CE52451:p.Glu5090= | ||||
| cDNA_position | 15270 | ||||
| CDS_position | 15270 | ||||
| Protein_position | 5090 | ||||
| Exon_number | 25/58 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8d.1:c.15270A>G | ||||
| HGVSp | CE52449:p.Glu5090= | ||||
| cDNA_position | 15270 | ||||
| CDS_position | 15270 | ||||
| Protein_position | 5090 | ||||
| Exon_number | 25/58 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8e.1:c.13992A>G | ||||
| HGVSp | CE52441:p.Glu4664= | ||||
| cDNA_position | 13992 | ||||
| CDS_position | 13992 | ||||
| Protein_position | 4664 | ||||
| Exon_number | 24/56 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| W06H8.8g.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W06H8.8g.1:c.13992A>G | ||||
| HGVSp | CE52417:p.Glu4664= | ||||
| cDNA_position | 13992 | ||||
| CDS_position | 13992 | ||||
| Protein_position | 4664 | ||||
| Exon_number | 24/58 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
