WormBase Tree Display for Variation: WBVar00271742

WBVar00271742 Name: Public_name: WBVar00271742
    Other_name: uCE5-1049
      haw164354
      cewivar00229734
      Y39H10A.2c.1:c.721-13A>C
      Y39H10A.2a.1:c.1690-13A>C
      Y39H10A.2b.1:c.1696-13A>C
    HGVSg: CHROMOSOME_V:g.3765495A>C
  Sequence_details: SMap: S_parent: Sequence: Y39H10A
    Flanking_sequences: AGATTTATATAATGGGGATGGTACTGGGATATTTCATGCGGCGAATTCCAAAAATCAACATAAACCCTGTAAGTTTTCATTCAGCCCGCCATCAGGATGA ATTTATGTTCAGTGGGTCGATCGAATAATGTGGTGCTTATCCTTAGGATCCATGATTTTCGTTATTGTAATTATGGAAGACTATACATCTGGCCACCTCT
    Mapping_target: Y39H10A
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (20)
    Laboratory: QX
    Person: WBPerson4037
      WBPerson1730
    Analysis: SNP_Swan
      WGS_Yanai
      Million_mutation_project_reanalysis
      WGS_Andersen
    History: Acquires_merge: WBVar01458996
        WBVar00584219
    Status: Live
  Affects: Gene: WBGene00021479
    Transcript: Y39H10A.2c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39H10A.2c.1:c.721-13A>C
        Intron_number: 4/6
      Y39H10A.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39H10A.2b.1:c.1696-13A>C
        Intron_number: 10/12
      Y39H10A.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y39H10A.2a.1:c.1690-13A>C
        Intron_number: 10/13
  Reference: WBPaper00038208
    WBPaper00040707
    WBPaper00005369
  Method: SNP_Swan