WormBase Tree Display for Variation: WBVar00266885
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| WBVar00266885 | Name | Public_name | WBVar00266885 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_I:g.2805392T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | W03D8 | |
| Flanking_sequences | GGGTCATGCACAAACTTATAAATACATTTTAGGGTCGCTGCATCCAACTTGAAGTTCCCACCTGTGACTGCTACGGTACAGAGATGGCCGGCCCGAATTG | CGACTGCGTGAGTTTTTATTTACCCCTAAAAACTCCAGTTTTTTTTAACTCAAAGTTTTCAGCTGCTCCAACCATCCAACTCCGCAACAATGATGAAAAC | |||
| Mapping_target | W03D8 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Swan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00535321 | |||
| WBVar01340885 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002174 | |||
| Transcript | W03D8.6b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | W03D8.6b.1:c.705T>C | ||||
| HGVSp | CE49988:p.Cys235= | ||||
| cDNA_position | 724 | ||||
| CDS_position | 705 | ||||
| Protein_position | 235 | ||||
| Exon_number | 6/32 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| W03D8.6e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W03D8.6e.1:c.204T>C | ||||
| HGVSp | CE50118:p.Cys68= | ||||
| cDNA_position | 204 | ||||
| CDS_position | 204 | ||||
| Protein_position | 68 | ||||
| Exon_number | 2/27 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| W03D8.6d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W03D8.6d.1:c.204T>C | ||||
| HGVSp | CE50017:p.Cys68= | ||||
| cDNA_position | 204 | ||||
| CDS_position | 204 | ||||
| Protein_position | 68 | ||||
| Exon_number | 2/27 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| W03D8.6a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W03D8.6a.1:c.705T>C | ||||
| HGVSp | CE50033:p.Cys235= | ||||
| cDNA_position | 705 | ||||
| CDS_position | 705 | ||||
| Protein_position | 235 | ||||
| Exon_number | 5/30 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| W03D8.6c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W03D8.6c.1:c.705T>C | ||||
| HGVSp | CE50056:p.Cys235= | ||||
| cDNA_position | 724 | ||||
| CDS_position | 705 | ||||
| Protein_position | 235 | ||||
| Exon_number | 6/32 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
