WormBase Tree Display for Variation: WBVar00252400

WBVar00252400 Name: Public_name: tm3793
    Other_name: ZK1098.10a.2:c.2578+74_2579del
      ZK1098.10o.1:c.1699+74_1700del
      ZK1098.10a.1:c.2578+74_2579del
      ZK1098.10g.1:c.1681+74_1682del
      ZK1098.10e.1:c.2731+74_2732del
      ZK1098.10f.1:c.1885+74_1886del
      ZK1098.10b.1:c.2632+74_2633del
      ZK1098.10p.1:c.883+74_884del
      ZK1098.10c.1:c.799+74_800del
      ZK1098.10d.1:c.2716+74_2717del
    HGVSg: CHROMOSOME_III:g.9554910_9555122del
  Sequence_details: SMap: S_parent: Sequence: ZK1098
    Flanking_sequences: aagctcaagacgtaagtactattcaaaata cggtgaatggtccgacgaaggatatcattc
    Mapping_target: ZK1098
    Source_location: 7 CHROMOSOME_III 9554909 9555123 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3793_external
      tm3793_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3793
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006755
    Transcript: ZK1098.10g.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10g.1:c.1681+74_1682del
        cDNA_position: ?-1682
        CDS_position: ?-1682
        Protein_position: ?-561
        Intron_number: 10/13
        Exon_number: 11/14
      ZK1098.10b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10b.1:c.2632+74_2633del
        cDNA_position: ?-2697
        CDS_position: ?-2633
        Protein_position: ?-878
        Intron_number: 17/21
        Exon_number: 18/22
      ZK1098.10a.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.2:c.2578+74_2579del
        cDNA_position: ?-2723
        CDS_position: ?-2579
        Protein_position: ?-860
        Intron_number: 18/22
        Exon_number: 19/23
      ZK1098.10o.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10o.1:c.1699+74_1700del
        cDNA_position: ?-1700
        CDS_position: ?-1700
        Protein_position: ?-567
        Intron_number: 11/14
        Exon_number: 12/15
      ZK1098.10a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.1:c.2578+74_2579del
        cDNA_position: ?-2788
        CDS_position: ?-2579
        Protein_position: ?-860
        Intron_number: 19/23
        Exon_number: 20/24
      ZK1098.10f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10f.1:c.1885+74_1886del
        cDNA_position: ?-1886
        CDS_position: ?-1886
        Protein_position: ?-629
        Intron_number: 12/15
        Exon_number: 13/16
      ZK1098.10e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10e.1:c.2731+74_2732del
        cDNA_position: ?-2796
        CDS_position: ?-2732
        Protein_position: ?-911
        Intron_number: 18/22
        Exon_number: 19/23
      ZK1098.10p.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10p.1:c.883+74_884del
        cDNA_position: ?-884
        CDS_position: ?-884
        Protein_position: ?-295
        Intron_number: 7/10
        Exon_number: 8/11
      ZK1098.10c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10c.1:c.799+74_800del
        cDNA_position: ?-800
        CDS_position: ?-800
        Protein_position: ?-267
        Intron_number: 6/9
        Exon_number: 7/10
      ZK1098.10d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10d.1:c.2716+74_2717del
        cDNA_position: ?-2781
        CDS_position: ?-2717
        Protein_position: ?-906
        Intron_number: 18/22
        Exon_number: 19/23
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000001 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: normal posture. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000031 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Gro. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: homozygous viable. Originally classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Egl. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Unc. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
  Remark: 34996/34997-35209/35210 (213 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele