WormBase Tree Display for Variation: WBVar00252400

WBVar00252400 Name: Public_name: tm3793
    Other_name: ZK1098.10a.2:c.2578+74_2579del
      ZK1098.10o.1:c.1699+74_1700del
      ZK1098.10a.1:c.2578+74_2579del
      ZK1098.10g.1:c.1681+74_1682del
      ZK1098.10e.1:c.2731+74_2732del
      ZK1098.10f.1:c.1885+74_1886del
      ZK1098.10b.1:c.2632+74_2633del
      ZK1098.10p.1:c.883+74_884del
      ZK1098.10c.1:c.799+74_800del
      ZK1098.10d.1:c.2716+74_2717del
    HGVSg: CHROMOSOME_III:g.9554910_9555122del
  Sequence_details: SMap: S_parent: Sequence: ZK1098
    Flanking_sequences: aagctcaagacgtaagtactattcaaaata cggtgaatggtccgacgaaggatatcattc
    Mapping_target: ZK1098
    Source_location: 7 CHROMOSOME_III 9554909 9555123 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3793_external
      tm3793_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3793
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006755
    Transcript: ZK1098.10g.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10g.1:c.1681+74_1682del
        cDNA_position: ?-1682
        CDS_position: ?-1682
        Protein_position: ?-561
        Intron_number: 10/13
        Exon_number: 11/14
      ZK1098.10b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10b.1:c.2632+74_2633del
        cDNA_position: ?-2697
        CDS_position: ?-2633
        Protein_position: ?-878
        Intron_number: 17/21
        Exon_number: 18/22
      ZK1098.10a.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.2:c.2578+74_2579del
        cDNA_position: ?-2723
        CDS_position: ?-2579
        Protein_position: ?-860
        Intron_number: 18/22
        Exon_number: 19/23
      ZK1098.10o.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10o.1:c.1699+74_1700del
        cDNA_position: ?-1700
        CDS_position: ?-1700
        Protein_position: ?-567
        Intron_number: 11/14
        Exon_number: 12/15
      ZK1098.10a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.1:c.2578+74_2579del
        cDNA_position: ?-2788
        CDS_position: ?-2579
        Protein_position: ?-860
        Intron_number: 19/23
        Exon_number: 20/24
      ZK1098.10f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10f.1:c.1885+74_1886del
        cDNA_position: ?-1886
        CDS_position: ?-1886
        Protein_position: ?-629
        Intron_number: 12/15
        Exon_number: 13/16
      ZK1098.10e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10e.1:c.2731+74_2732del
        cDNA_position: ?-2796
        CDS_position: ?-2732
        Protein_position: ?-911
        Intron_number: 18/22
        Exon_number: 19/23
      ZK1098.10p.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10p.1:c.883+74_884del
        cDNA_position: ?-884
        CDS_position: ?-884
        Protein_position: ?-295
        Intron_number: 7/10
        Exon_number: 8/11
      ZK1098.10c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10c.1:c.799+74_800del
        cDNA_position: ?-800
        CDS_position: ?-800
        Protein_position: ?-267
        Intron_number: 6/9
        Exon_number: 7/10
      ZK1098.10d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10d.1:c.2716+74_2717del
        cDNA_position: ?-2781
        CDS_position: ?-2717
        Protein_position: ?-906
        Intron_number: 18/22
        Exon_number: 19/23
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000001 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: normal posture. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000031 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Gro. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: homozygous viable. Originally classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000640 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Egl. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Miller: non-Unc. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: KG
  Remark (2)
  Method: NBP_knockout_allele