WormBase Tree Display for Variation: WBVar00251233

WBVar00251233 Name: Public_name: tm2332
    Other_name: H06H21.10a.1:c.2088+84_2187delinsC
      H06H21.10d.1:c.2193+84_2292delinsC
      H06H21.10b.1:c.2088+84_2187delinsC
      H06H21.10c.1:c.2088+84_2187delinsC
      H06H21.10e.1:c.2193+84_2292delinsC
      H06H21.10f.1:c.2193+84_2292delinsC
    HGVSg: CHROMOSOME_IV:g.4834332_4834553delinsG
  Sequence_details: SMap: S_parent: Sequence: H06H21
    Flanking_sequences: ttcaaatgtgtttcttgtatcttttagctg aaaaacttgatgtttcaaaaacttgataag
    Mapping_target: H06H21
    Source_location: 7 CHROMOSOME_IV 4834331 4834554 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: G
      Deletion
    PCR_product: tm2332_external
      tm2332_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2332
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00019166
    Transcript: H06H21.10f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10f.1:c.2193+84_2292delinsC
        cDNA_position: ?-2292
        CDS_position: ?-2292
        Protein_position: ?-764
        Intron_number: 13/24
        Exon_number: 14/25
      H06H21.10c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10c.1:c.2088+84_2187delinsC
        cDNA_position: ?-2187
        CDS_position: ?-2187
        Protein_position: ?-729
        Intron_number: 11/19
        Exon_number: 12/20
      H06H21.10b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10b.1:c.2088+84_2187delinsC
        cDNA_position: ?-2187
        CDS_position: ?-2187
        Protein_position: ?-729
        Intron_number: 11/21
        Exon_number: 12/22
      H06H21.10e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10e.1:c.2193+84_2292delinsC
        cDNA_position: ?-2292
        CDS_position: ?-2292
        Protein_position: ?-764
        Intron_number: 13/23
        Exon_number: 14/24
      H06H21.10d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10d.1:c.2193+84_2292delinsC
        cDNA_position: ?-2292
        CDS_position: ?-2292
        Protein_position: ?-764
        Intron_number: 13/21
        Exon_number: 14/22
      H06H21.10a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H06H21.10a.1:c.2088+84_2187delinsC
        cDNA_position: ?-2187
        CDS_position: ?-2187
        Protein_position: ?-729
        Intron_number: 11/22
        Exon_number: 12/23
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000031 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. M. Han: slow growth. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as 'homozygous viable' by the National Bioresource Project of Japan. Originally classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000138 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. M. Han: normal fatty acid composition. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MH
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. M. Han: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. M. Han: fertile. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001422 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. S. Tuck: no obvious defects in endocytosis Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 27298/27299-G-27520/27521 (222 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele