WormBase Tree Display for Variation: WBVar00251233
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WBVar00251233 | Name | Public_name | tm2332 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | H06H21.10a.1:c.2088+84_2187delinsC | |||||||
H06H21.10d.1:c.2193+84_2292delinsC | ||||||||
H06H21.10b.1:c.2088+84_2187delinsC | ||||||||
H06H21.10c.1:c.2088+84_2187delinsC | ||||||||
H06H21.10e.1:c.2193+84_2292delinsC | ||||||||
H06H21.10f.1:c.2193+84_2292delinsC | ||||||||
HGVSg | CHROMOSOME_IV:g.4834332_4834553delinsG | |||||||
Sequence_details | SMap | S_parent | Sequence | H06H21 | ||||
Flanking_sequences | ttcaaatgtgtttcttgtatcttttagctg | aaaaacttgatgtttcaaaaacttgataag | ||||||
Mapping_target | H06H21 | |||||||
Source_location | 7 | CHROMOSOME_IV | 4834331 | 4834554 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Insertion | G | ||||||
Deletion | ||||||||
PCR_product | tm2332_external | |||||||
tm2332_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 2332 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00019166 | ||||||
Transcript | H06H21.10f.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10f.1:c.2193+84_2292delinsC | |||||||
cDNA_position | ?-2292 | |||||||
CDS_position | ?-2292 | |||||||
Protein_position | ?-764 | |||||||
Intron_number | 13/24 | |||||||
Exon_number | 14/25 | |||||||
H06H21.10c.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10c.1:c.2088+84_2187delinsC | |||||||
cDNA_position | ?-2187 | |||||||
CDS_position | ?-2187 | |||||||
Protein_position | ?-729 | |||||||
Intron_number | 11/19 | |||||||
Exon_number | 12/20 | |||||||
H06H21.10b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10b.1:c.2088+84_2187delinsC | |||||||
cDNA_position | ?-2187 | |||||||
CDS_position | ?-2187 | |||||||
Protein_position | ?-729 | |||||||
Intron_number | 11/21 | |||||||
Exon_number | 12/22 | |||||||
H06H21.10e.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10e.1:c.2193+84_2292delinsC | |||||||
cDNA_position | ?-2292 | |||||||
CDS_position | ?-2292 | |||||||
Protein_position | ?-764 | |||||||
Intron_number | 13/23 | |||||||
Exon_number | 14/24 | |||||||
H06H21.10d.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10d.1:c.2193+84_2292delinsC | |||||||
cDNA_position | ?-2292 | |||||||
CDS_position | ?-2292 | |||||||
Protein_position | ?-764 | |||||||
Intron_number | 13/21 | |||||||
Exon_number | 14/22 | |||||||
H06H21.10a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | H06H21.10a.1:c.2088+84_2187delinsC | |||||||
cDNA_position | ?-2187 | |||||||
CDS_position | ?-2187 | |||||||
Protein_position | ?-729 | |||||||
Intron_number | 11/22 | |||||||
Exon_number | 12/23 | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | IV | ||||||
Description | Phenotype | WBPhenotype:0000031 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comments to the National Bioresource Project of Japan: Dr. M. Han: slow growth. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
Phenotype_not_observed (5) | ||||||||
Remark | 27298/27299-G-27520/27521 (222 bp deletion + 1 bp insertion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |