WormBase Tree Display for Variation: WBVar00251069

WBVar00251069 Name: Public_name: tm2130
    Other_name: Y59A8B.11c.1:c.47-216_693del
      Y59A8B.11a.3:c.-26-216_666del
      Y59A8B.11a.1:c.-24-218_666del
      Y59A8B.11b.1:c.47-216_738del
      Y59A8B.11a.4:c.-26-216_666del
      Y59A8B.11a.2:c.-242_666del
    HGVSg: CHROMOSOME_V:g.18082731_18083687del
  Sequence_details: SMap: S_parent: Sequence: Y59A8B
    Flanking_sequences: tttaacagcatcagcgacagaaagatacgc agtaataaaaaattcttcaaagtttggtac
    Mapping_target: Y59A8B
    Source_location: 7 CHROMOSOME_V 18082730 18083688 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2130_external
      tm2130_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2130
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013348
    Transcript: Y59A8B.11c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11c.1:c.47-216_693del
        cDNA_position: ?-765
        CDS_position: ?-693
        Protein_position: ?-231
        Intron_number: 2-4/6
        Exon_number: 3-5/7
      Y59A8B.11a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11a.1:c.-24-218_666del
        cDNA_position: ?-809
        CDS_position: ?-666
        Protein_position: ?-222
        Intron_number: 1-3/5
        Exon_number: 2-4/6
      Y59A8B.11a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11a.2:c.-242_666del
        cDNA_position: 775-1682
        CDS_position: ?-666
        Protein_position: ?-222
        Intron_number: 2/4
        Exon_number: 1-3/5
      Y59A8B.11a.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11a.3:c.-26-216_666del
        cDNA_position: ?-776
        CDS_position: ?-666
        Protein_position: ?-222
        Intron_number: 1-3/5
        Exon_number: 2-4/6
      Y59A8B.11b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11b.1:c.47-216_738del
        cDNA_position: ?-738
        CDS_position: ?-738
        Protein_position: ?-246
        Intron_number: 1-2/3
        Exon_number: 2-3/4
      Y59A8B.11a.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y59A8B.11a.4:c.-26-216_666del
        cDNA_position: ?-810
        CDS_position: ?-666
        Protein_position: ?-222
        Intron_number: 1-3/5
        Exon_number: 2-4/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
    Mapping_data: In_multi_point: 5668
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
  Remark: 153176/153177-154133/154134 (957 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele