WormBase Tree Display for Variation: WBVar00250682

WBVar00250682 Name: Public_name: tm1711
    Other_name: F42G9.7.1:c.637-234_758-100del
    HGVSg: CHROMOSOME_III:g.787700_788561del
  Sequence_details: SMap: S_parent: Sequence: F42G9
    Flanking_sequences: attttcaagttaaaattctagttaactata tgtttggatacaaattaaaagtctgtcaca
    Mapping_target: F42G9
    Source_location: 7 CHROMOSOME_III 787699 788562 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1711_external
      tm1711_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1711
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004922
    Transcript: F42G9.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F42G9.7.1:c.637-234_758-100del
        Intron_number: 5-6/9
        Exon_number: 6/10
    Interactor: WBInteraction000520044
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
    Mapping_data: In_multi_point: 5047
  Description: Phenotype: WBPhenotype:0000204 Paper_evidence: WBPaper00042242
        Curator_confirmed: WBPerson557
        Remark: Mutant shows mild defects in aBoc steps. Paper_evidence: WBPaper00042242
            Curator_confirmed: WBPerson557
      WBPhenotype:0000205 Paper_evidence: WBPaper00042242
        Curator_confirmed: WBPerson557
        Remark: The mutation caused a detectable defect in the expulsion of gut contents (Exp) reducing the Exp frequency. Measured as Exp per cycle (Exp frequency). Paper_evidence: WBPaper00042242
            Curator_confirmed: WBPerson557
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000103 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. G. Hermann to the National Bioresource Project of Japan: wild-type gut granules. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000157 Paper_evidence: WBPaper00042242
        Curator_confirmed: WBPerson557
  Reference: WBPaper00042242
  Remark: 31884/31885-32746/32747 (862 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele