WormBase Tree Display for Variation: WBVar00250033

WBVar00250033 Name: Public_name: tm1013
    Other_name: T28C12.4a.2:c.-6+6_377del
      T28C12.4b.1:c.-32-356_137del
      T28C12.4a.1:c.-22_377del
    HGVSg: CHROMOSOME_V:g.6323260_6323866del
  Sequence_details: SMap: S_parent: Sequence: T28C12
    Flanking_sequences: tcgtctcatctctgtgtctcgtgatctctc cgcagaacctccagttggagaactgagatt
    Mapping_target: T28C12
    Source_location: 7 CHROMOSOME_V 6323259 6323867 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1013_external
      tm1013_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1013
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00020891
    Transcript: T28C12.4a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T28C12.4a.2:c.-6+6_377del
        cDNA_position: ?-411
        CDS_position: ?-377
        Protein_position: ?-126
        Intron_number: 1-4/11
        Exon_number: 2-5/12
      T28C12.4b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-172
        CDS_position: ?-137
        Protein_position: ?-46
        Intron_number: 2/9
        Exon_number: 1-3/10
      T28C12.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T28C12.4b.1:c.-32-356_137del
        cDNA_position: ?-324
        CDS_position: ?-137
        Protein_position: ?-46
        Intron_number: 1-3/10
        Exon_number: 2-4/11
      T28C12.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T28C12.4a.1:c.-22_377del
        cDNA_position: 56-454
        CDS_position: ?-377
        Protein_position: ?-126
        Intron_number: 2-3/10
        Exon_number: 1-4/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001612 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. J. Lee to the National Bioresource Project of Japan: not resistant to ethanol. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 9148/9149-9755/9756 (607 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele