WormBase Tree Display for Variation: WBVar00249698

WBVar00249698 Name: Public_name: tm666
    HGVSg: CHROMOSOME_V:g.19050641_19051121delinsTTTA
  Sequence_details: SMap: S_parent: Sequence: Y39B6A
    Flanking_sequences: cggcgtgctgtgaagccaagaaggcggtgt tgaagcttaacacgatttgaggcagtttcc
    Mapping_target: Y39B6A
    Source_location: 7 CHROMOSOME_V 19050640 19051122 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTTA
      Deletion
    PCR_product: tm666_external
      tm666_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 666
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000214
    Transcript: Y39B6A.20.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-112
        CDS_position: ?-112
        Protein_position: ?-38
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000324 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: slightly shorter. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IR
      WBPhenotype:0000547 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: starved appearance. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IR
      WBPhenotype:0000673 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: less progeny at 25C. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IR
        Phenotype_assay: Temperature: 25 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
      WBPhenotype:0001507 Paper_evidence: WBPaper00049138
        Person_evidence: WBPerson18666
        Curator_confirmed: WBPerson18666
        Remark: mutants are tolerant to Cry6Aa protein Paper_evidence: WBPaper00049138
            Person_evidence: WBPerson18666
            Curator_confirmed: WBPerson18666
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000531 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: normal development. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IR
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. N. Tavernarakis to the National Bioresource Project of Japan: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IR
  Reference: WBPaper00049138
  Remark: 92584/92585-TTTA-93065/93066 (481 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele