WormBase Tree Display for Variation: WBVar00249025
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| WBVar00249025 | Evidence | Paper_evidence | WBPaper00035599 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | sy644 | |||||
| Other_name | CE05731:p.Gln362Ter | ||||||
| F25H8.6.1:c.1084C>T | |||||||
| HGVSg | CHROMOSOME_IV:g.9919662C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F25H8 | |||
| Flanking_sequences | aaaattgaagatgatcataaaattcatatg | aggtaaaatttgcgttaaataatttcaaat | |||||
| Mapping_target | F25H8 | ||||||
| Type_of_mutation | Substitution | c | t | ||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | PS | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00009133 | |||||
| Transcript | F25H8.6.1 | VEP_consequence | stop_gained,splice_region_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25H8.6.1:c.1084C>T | ||||||
| HGVSp | CE05731:p.Gln362Ter | ||||||
| cDNA_position | 1107 | ||||||
| CDS_position | 1084 | ||||||
| Protein_position | 362 | ||||||
| Exon_number | 5/10 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Isolation | Mutagen | EMS | Paper_evidence | WBPaper00035599 | |||
| Genetics | Interpolated_map_position | IV | 4.44685 | ||||
| Description | Phenotype | WBPhenotype:0000006 | Paper_evidence | WBPaper00035599 | |||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | bed-3 mutations caused an Egl (egg-laying defective) phenotype | Paper_evidence | WBPaper00035599 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| WBPhenotype:0000111 | Paper_evidence | WBPaper00035599 | |||||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | bed-3(sy644) affected the vulval expression pattern of cdh-3::cfp | Paper_evidence | WBPaper00035599 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| WBPhenotype:0000239 | Paper_evidence | WBPaper00035599 | |||||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | Granddaughters of P5.p, P6.p and P7.p often failed to divide in bed-3 mutants | Paper_evidence | WBPaper00035599 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| WBPhenotype:0000697 | Paper_evidence | WBPaper00035599 | |||||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | Pvl | Paper_evidence | WBPaper00035599 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Reference | WBPaper00035599 | ||||||
| Method | Substitution_allele |
