WormBase Tree Display for Variation: WBVar00248657
expand all nodes | collapse all nodes | view schema
WBVar00248657 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248657 | |||
Other_name | snp_ZK1010[3] | ||||
ZK1010.t1.1:n.61A>G | |||||
ZK1010.9.1:c.1159-34A>G | |||||
HGVSg | CHROMOSOME_III:g.13009483A>G | ||||
Sequence_details | SMap | S_parent | Sequence | F14F7 | |
Flanking_sequences | taatccattggggtttccccgcgtc | aatctcatcctgatcgaacattttt | |||
Mapping_target | F14F7 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00004906 | |||
WBGene00014639 | |||||
Transcript | ZK1010.9.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1010.9.1:c.1159-34A>G | ||||
Intron_number | 4/9 | ||||
ZK1010.t1 | VEP_consequence | non_coding_transcript_exon_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK1010.t1.1:n.61A>G | ||||
cDNA_position | 61 | ||||
Exon_number | 1/1 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9328 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_ZK1010.3 | |||||
[20040130 db] this Allele was previously named snp_ZK1010.3 | |||||
[20090224 db] original Wicks name : ZK1010:32985..33611@487 Psnp=0.9328 VarS=AG | |||||
[20090224 db] original Wicks id : yx32b12.s1@426,g,47 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |