WormBase Tree Display for Variation: WBVar00248578

WBVar00248578 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00248578
    Other_name: snp_ZK662[2]
      ZK662.3b.1:c.2169-331del
      ZK662.3c.1:c.2220-331del
      ZK662.3d.1:c.2187-331del
      ZK662.3a.1:c.2202-331del
    HGVSg: CHROMOSOME_X:g.15715568del
  Sequence_details: SMap: S_parent: Sequence: ZK662
    Flanking_sequences: attatgaaaaaaccgaaaatttttt agtgttttattatgatatttggtcg
    Mapping_target: ZK662
    Type_of_mutation: Deletion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00003638
    Transcript: ZK662.3c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: ZK662.3c.1:c.2220-331del
        Intron_number: 14/15
      ZK662.3d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: ZK662.3d.1:c.2187-331del
        Intron_number: 14/15
      ZK662.3a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: ZK662.3a.1:c.2202-331del
        Intron_number: 15/17
      ZK662.3b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: ZK662.3b.1:c.2169-331del
        Intron_number: 15/17
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9091 VarD1=T
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_ZK662.2
    [20040130 db] this Allele was previously named snp_ZK662.2
    [20090224 db] original Wicks name : ZK662:21206..22574@567 Psnp=0.9091 VarD1=T
    [20090224 db] original Wicks id : vd48f05.s1@501,-,47
  Method: SNP_Wicks