Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00248556

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00248556NamePublic_nameWBVar00248556
Other_namesnp_ZK488[4]
haw160042
cewivar00220608
ZK488.2.1:c.1068+52G>A
HGVSgCHROMOSOME_V:g.612028G>A
Sequence_detailsSMapS_parentSequenceZK488
Flanking_sequencestctgaaaatgatctttaaaaagctttccagtacggcacgggtctcaacaa
Mapping_targetZK488
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00006622From_analysisMillion_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00022852From_analysisMillion_mutation_project_reanalysis
WBStrain00022856From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00579907
StatusLive
AffectsGeneWBGene00003680
TranscriptZK488.2.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK488.2.1:c.1068+52G>A
Intron_number6/7
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.7349 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_ZK488.4
[20040130 db] this Allele was previously named snp_ZK488.4
[20090224 db] original Wicks name : ZK488:22777..23684@478 Psnp=0.7349 VarS=AG
[20090224 db] original Wicks id : eam31b05.s1@352,a,33
MethodSNP_Wicks